Transcript Information: S_Transcript_90345.p1


Annotated TAIR IDAT3G21000.1
Annotated Gene NameGag-Pol-related retrotransposon family protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:7363921-7365138 | Forward length=405
E-Value7E-05
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.0077854605188
Replicate 21.7018982127115
Replicate 31.3450522809919
Condition 2: 8 Hour
Replicate 11.5552879333673
Replicate 21.7884928085055
Replicate 31.0762559800552
Condition 3: 24 Hour
Replicate 10.88850157254871
Replicate 21.7164738080263
Replicate 30.99048701731171


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_90345.p1 GENE.S_Transcript_90345~~S_Transcript_90345.p1 ORF type:complete len:713 (+),score=58.38,gag_pre-integrs|PF13976.2|3.4e-12,rve|PF00665.22|5.9e-11,RVT_2|PF07727.10|6.6e-07 S_Transcript_90345:1381-3519(+)
ATGGATACTGCTATGGCCCAAACAACTATGAATGGTGAAGATATATGCCTTGCCGATAGTGCTACTACACACACCATACTCAAGAACAAAGAATATTTCTCTGATATCAAAATACATAAAGCTAATGTTAGTACTATAAGCGGTACTGCAACTTTGATAGATGGCTCCGGAAGAGCCAGTCTGATGTTACCTGGAGGAACGAAATTTCAAATTGTTGATGCCCTATATTCCCCCAAGTCTAAGAGAAATTTGTTAAGTTTTAAGGATATCCGCAGAAATGGGTATCACATTGAGACTACTAGTGAAGGAGATGTTGAGTATCTATATGTAACTAGTAGATTATCGGGTACCAAACAAGTGTTAGAAAGACTACCCGCATTATCTTCTTGTTTGTACTACACGAGAATTAGTACAATTGAATCACATACGATCATAAACCAGAAGTTTATTGATCATAATAACTTTAAAATATGGCATGACCGGTTGGGTCATCCCGGATCATCAATGATGCGAAAAATTGTTAAAAACTCATGTGGACACCCATTGAAGGACCAGAAGATTCTTCAATCAAATGAGTTCATTTGTGCTGCTTGCTCACAAGGCAAGTTAATAATTAGACCTTCGCCAGCTAAAATAGGGTATGAATCCCTTAACTTTTTAGAACGTATACAAGGCGATATATGTGGACCGATTGATCCACCATGTGGACCATTTAGATATTTTATGGTTTTAATAGATGCATCAACAAGATGGTCACATGTATCTTTATTGTCTACTCGCAACCTGGCGTTTGCAAGATTGCTTGCTCAGTTGATCAGGTTAAGAGCACATTTTCCAGACTATACAATCAAGACAATTCGCCTTGATAATGCTGGTGAATTCACTTCCCAATCTTTTAATGATTATTGTATGTCTATTGGGATAAGTGTAGAACATCCTGTAGCACATGTTCACACACAGAATGGTCTAACAGAATCATTGATCAAACGCCTTCAACTCATTGCGAGGCCATTATTAATGAAATGTAAACTCCCAGTTACAGCTTGGGGACATGCCATTTTGCATGCAGCAGCACTAATTCGCATCAGACCATCAAGTTATCATGAGTCATCTCCCCTCCAATTGGTTTTCGGTCAGGAACCAAATATTTCCCATCTAAGAACTTTTGGATGTGCCGTATATGTACCAATAGCTCCACCACAACGTACAAAGATGGGACCACAAAGAAAGTTGGGAATATACGTTGGTTTTGAATCTCCTTCTATAATAAAATATATAGAGCCATCGACGGGGGACTTGTTTACGGCTCGATTTGCTGATTGTCATTTTGACGAATCAAACTTCCCAACATTAGGGGGAGAAAGGAAGCAGCTGGAAAAGGAACTAACATGGAATGAACCTTCACTATTGCATCTTGATCCTCGAAATAGGCAATGTGAGATAGAAGTTCAAAAAATAATACATTTGCAAGGTTTAGCAAACCGATTGCCAGACGCATTTTCTGACCCAAAAGGTGTGACCAAGTCACTTATACCAGCTGCAAATGCTCCTATTAGAATTGATGTCCCACGAGGACAACCTCACATTGCAAATGAATCTAAGGCCCGCATGAAGCGTGGTAGACCTATCGGTTCCAAAGATAAAAATCCTCGAAAGCGAAAGGGAGCAAGGATTGAAGATGGCCCAATAGAGGATAAAATAAACTCAATAGAATCTCCAGAAGAGAACATGGACACGACTAATCTTCCAGAAGAAGATCAGGTACCTGAAAATGAAGAGATCTCAATAAACTACGTCGTGTCAGATATTGTATGGAACCGACATGAAATCGACGTCGATGATGATAAAGCGCTTGAAATTTTTGCATACAATATAGCACTAGAGATTATGGATGAAAATGAGGATCATGAACCAATGACCATTGAAGAATGTAAAAGAAGACATGACTGGCCAAAATGGAAAAATGCAATTGAGGCAGAGTTGCAATCGCTAGAAAAGCGAGAGGTTTTTGGACCAGTAGTCCGAACACCGGCAGGTGTTAAACCAGACGGTTATAGATGGGTCTTTGTGCATAAGAGAAATGAGAATAATGAAATTGTGAGACATAAAGCTCGTTTGACTGCACAAGGATTCTCATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_90345.p1 GENE.S_Transcript_90345~~S_Transcript_90345.p1 ORF type:complete len:713 (+),score=58.38,gag_pre-integrs|PF13976.2|3.4e-12,rve|PF00665.22|5.9e-11,RVT_2|PF07727.10|6.6e-07 S_Transcript_90345:1381-3519(+)
MDTAMAQTTMNGEDICLADSATTHTILKNKEYFSDIKIHKANVSTISGTATLIDGSGRASLMLPGGTKFQIVDALYSPKSKRNLLSFKDIRRNGYHIETTSEGDVEYLYVTSRLSGTKQVLERLPALSSCLYYTRISTIESHTIINQKFIDHNNFKIWHDRLGHPGSSMMRKIVKNSCGHPLKDQKILQSNEFICAACSQGKLIIRPSPAKIGYESLNFLERIQGDICGPIDPPCGPFRYFMVLIDASTRWSHVSLLSTRNLAFARLLAQLIRLRAHFPDYTIKTIRLDNAGEFTSQSFNDYCMSIGISVEHPVAHVHTQNGLTESLIKRLQLIARPLLMKCKLPVTAWGHAILHAAALIRIRPSSYHESSPLQLVFGQEPNISHLRTFGCAVYVPIAPPQRTKMGPQRKLGIYVGFESPSIIKYIEPSTGDLFTARFADCHFDESNFPTLGGERKQLEKELTWNEPSLLHLDPRNRQCEIEVQKIIHLQGLANRLPDAFSDPKGVTKSLIPAANAPIRIDVPRGQPHIANESKARMKRGRPIGSKDKNPRKRKGARIEDGPIEDKINSIESPEENMDTTNLPEEDQVPENEEISINYVVSDIVWNRHEIDVDDDKALEIFAYNIALEIMDENEDHEPMTIEECKRRHDWPKWKNAIEAELQSLEKREVFGPVVRTPAGVKPDGYRWVFVHKRNENNEIVRHKARLTAQGFS*

Click here to download the sequence:
Link to NCBI Protein BLAST