Transcript Information: S_Transcript_90365.p1


Annotated TAIR IDAT5G56900.2
Annotated Gene NameCwfJ-like family protein / zinc finger (CCCH-type) family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:23019750-23022670 | Reverse length=596
E-Value2.9E-155
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.0368035581454
Replicate 23.284628782439
Replicate 33.3673534984102
Condition 2: 8 Hour
Replicate 14.9120281067553
Replicate 24.5246435451132
Replicate 34.790078113479
Condition 3: 24 Hour
Replicate 12.2703951942472
Replicate 23.9470683082403
Replicate 33.3298766489901


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_90365.p1 GENE.S_Transcript_90365~~S_Transcript_90365.p1 ORF type:complete len:356 (+),score=74.06,CwfJ_C_1|PF04677.11|4.3e-40,CwfJ_C_2|PF04676.10|7.4e-16,zf-CCCH|PF00642.20|0.0015,zf-CCCH|PF00642.20|0.017,Torus|PF16131.1|0.015,Torus|PF16131.1|0.03,Torus|PF16131.1|2.7e+03 S_Transcript_90365:810-1877(+)
ATGTCAGCCGCAGAAATTAGCATGAAGCCTCCAAATACAACTTTGTCTCCATACACATTTGATGATAGTACTCTGACCAAGGAGACAACAAAGAGACCAGTGGATAGTACTCTTGATGCGCAATATTGGCGTTATGATGTGAAAAAGCAGAAGCGTGGGGATGGAGATGGGGATAAGCTGTGTTTTAAGTTTCTGTCTTCTGGTTCATGCCAGCGAGGGGAGAACTGTCATTTTCGACATGATGCAGATGCTAGGGAACAATATCTGAGGGGTGTATGTTTTGATTTTCTCAACAAAGGTAAATGTGAAAGAGGACCAGAGTGTCAATTCAAACATAATTTGGTTGATGAAGGTGAAAATGTTTCAAGCAGGAGAGGTAGATCGGGAAGCACAAATGCTAACAGGTCAAAAAAAGAGTGCTGGTTTTGCTTGTCGAGCCCCAATGTTGAGACACATCTAATTATTAGCATTGGAGAAAACATATATTGTGCATTACCAAAAGGCCCACTGGTTGATGATCATGTACTATTGATTCCAGTTGAGCATTCTTCTAGCACTTTGAGTTTACATCCAGATGGTCAAACAAAGCTGCAGAGATTTCAAAGTAGTCTTCGAATGTTCTACAAATCCCAAGACAAAGACATTATTTTCTTCGAATTGATCTCTAAACGAGGTACCCATGCTAATCTTCAGGCTATTCCTATTCCACAAACCAAAGCATATGCTGTGAAAAATATTTTCAGCTTTGCTGCTAAAAAGTTGGAATTTGAGTTTCAGACAATCAAAGGTGATAATGGTTCGGAGGCAAGAAAATTGTTGACAACAGAGTTCCGAAGCGTCTCTGGTTTCTTTTATGTAGAGCTACCTGATGGCACTGTTTTGGGACATGCTATAGACGAAAATGAAAGCTTCCCGGTTCAGTTTGGTCGTGAGGTTATGGCTGGCTTACTCAAAATGCCAGATAAGGCTGATTGGAGGAACTGTAAGGTTATCAAAGAGGAGGAGATGAAAATGACAGAAGCTTTCAAGATACAATTCGAGGAGTTTGATCCCAATCGGGATGGGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_90365.p1 GENE.S_Transcript_90365~~S_Transcript_90365.p1 ORF type:complete len:356 (+),score=74.06,CwfJ_C_1|PF04677.11|4.3e-40,CwfJ_C_2|PF04676.10|7.4e-16,zf-CCCH|PF00642.20|0.0015,zf-CCCH|PF00642.20|0.017,Torus|PF16131.1|0.015,Torus|PF16131.1|0.03,Torus|PF16131.1|2.7e+03 S_Transcript_90365:810-1877(+)
MSAAEISMKPPNTTLSPYTFDDSTLTKETTKRPVDSTLDAQYWRYDVKKQKRGDGDGDKLCFKFLSSGSCQRGENCHFRHDADAREQYLRGVCFDFLNKGKCERGPECQFKHNLVDEGENVSSRRGRSGSTNANRSKKECWFCLSSPNVETHLIISIGENIYCALPKGPLVDDHVLLIPVEHSSSTLSLHPDGQTKLQRFQSSLRMFYKSQDKDIIFFELISKRGTHANLQAIPIPQTKAYAVKNIFSFAAKKLEFEFQTIKGDNGSEARKLLTTEFRSVSGFFYVELPDGTVLGHAIDENESFPVQFGREVMAGLLKMPDKADWRNCKVIKEEEMKMTEAFKIQFEEFDPNRDG*

Click here to download the sequence:
Link to NCBI Protein BLAST