Transcript Information: S_Transcript_90651.p1


Annotated TAIR IDAT1G20960.1
Annotated Gene NameU5 small nuclear ribonucleoprotein helicase, putative
Annotated Gene Symbol(s)emb1507
Annotation TypeOrtholog
Chromosome Positionchr1:7302591-7309914 | Reverse length=2171
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 117.913066947096
Replicate 220.006432220428
Replicate 320.508864460276
Condition 2: 8 Hour
Replicate 128.267402132949
Replicate 227.322827080658
Replicate 327.863277378963
Condition 3: 24 Hour
Replicate 120.992351306618
Replicate 218.522306981588
Replicate 318.945484227167


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_90651.p1 GENE.S_Transcript_90651~~S_Transcript_90651.p1 ORF type:complete len:2178 (+),score=594.62,Sec63|PF02889.12|1.8e-113,Sec63|PF02889.12|2.6e-99,DEAD|PF00270.25|1.1e-28,DEAD|PF00270.25|1.8e-24,DEAD|PF00270.25|2.1e+03,ResIII|PF04851.11|1e-12,ResIII|PF04851.11|1.5e-10,Helicase_C|PF00271.27|2.6e+03,Helicase_C|PF00271.27|4e-09,Helicase_C|PF00271.27|7.8,AAA_22|PF13401.2|0.048,AAA_22|PF13401.2|0.0018 S_Transcript_90651:160-6693(+)
ATGTCGAATCTAGGCGGTGGTGCCGAGGCACACGCTAGATTTAAGCAGTATGAGTACAGGGCAAACTCGAGTTTGGTCCTTACGACTGATTCGAGGCCTAGGGATACCCACGAGCCCACTGGTGAGCCCGAGTCGTTGCACGGTAAAATCGACCCCAAGTCGTTTGGGGACCGTGCTGCTCGAGGCCGGCCACCTGAGTTGGATGAGAAGCTCAAGAAGTCTTCGAAGAAGAAGAAGGAGAGGGAGTTGCTTGCAGAGCCTGGTCCTACTCGACAGACCAAGAAACGCCGTCTTCAGGAGGAGAGTGTATTGACTGTGACTGATGAGGGTGTTTACCAGCCCAAGACGAAGGAGACCCAGGCTGCTTATGAGGCTATGCTTAATGTGATTCAACTGCAGCTTGGTGGGCAGCCTCTTAATATTGTTAGTGCTGCTGCTGATGAGATTCTTGCGGTTCTGAAGAATGATGCTATTAAGAACCCTGATAAGAAGAAGGAGATTGAGAAGTTGTTGAATCCGATTTCGAGCAGTGTGTTTGATAATTTGGTTAGTATTGGGAAGATGATAACAGATTATCAAGAAGGGGGCGAGGGGGCTCCGTTGGCTAATGGGGATGGTGCTCTTGATGATGAGATGGGTGTTGCTGTTGAGTTTGAGGAGAACGAGGATGATGAGGATGAGAGTGATCTTGATTTGGTGCAAGAGGATGAGGAGGAAGACGAGGATCTGGCTGAGCCTGGTAGGTCTGGGGCTATGCAGATGGGTGGGATTGATGACGAGGATATGAAGGATGCTGATGAGGGTATGAATTTGAATGTTCAAGATATTGATGCTTATTGGCTTCAGAGAAAGATATCTCAAGCTTATGATCAGCAGATTGATCCACAACAGTGCCAGAAGCTTGCTGAAGAGGTTCTTAAGATACTTGCTGAAGGGGATGACAGGGAGGTTGAAACTAAGCTCTTGATGCACCTTGATTTTGATAAGTTTAGCCTCATTAAGTTCCTTCTGCGAAATAGGCGGAAGGTTGTGTGGTGTACCCGCCTGGCACGAGCTGAAGACCAGGAGGAACGGAAAAAGATTGAAGAAGAAATGATGGAATCTGGGTCTGATTTGGCTGCTATTCTGGAGCAGTTGCATGCCACCAGGGCTACTGCCAAGGAGAGGCAGAAGAACTTGGAGAAGAGTATAAGAGAGGAGGCTCGTCGGTTAAAGGACGAGAGTGTTGCGGATGGGGACAGTGGTCGAAGAGGATTAGCCGAGAGAGATGGTGAGAGTGGTTGGTTGAATGGGCAGCGACAGTTGCTTGATCTGGAGAGCATTGCATTTCAACAGGGTGGCCGATTTATGGCTAATAAGAAGACTACATTGCCCGATGGATCCTACAGGCATCAAGCTAAAGGATATGAGGAGGTTCACATTCCTGCATTGAAAGCAAAAGCACTTCAACCGGGTGAAGAACTTGTGAAGATATCATCAATGCCAGAGTGGGCACAACCAGCTTTCAAAGGGATGACGCAGTTGAATAGGGTGCAGAGTAAAGTTTATGAGACTGCACTCTTTTCAGCTGACAACATTCTGCTTTGTGCCCCTACTGGTGCAGGGAAGACTAATGTCGCTGTGCTTACCATATTACAGCAGATTGCTTTGAATAGGGCACCAGATGGGTCATTTAACCACAACAGTTATAAAATTGTGTATGTTGCGCCTATGAAGGCCCTTGTGGCAGAAGTGGTTGGTAACTTGTCTAACCGTCTGCAGCATTATGGTGTGAATGTGAAGGAGTTGAGTGGAGATCAGTCACTGACCAAGCAGCAGATAGATGAAACTCAAATAATTGTCACAACCCCAGAAAAGTGGGATATCATAACAAGGAAATCAGGGGATCGGACATACACACAGCTTGTAAAACTTCTTATCATTGATGAGATACATTTACTTCATGACAACAGAGGCCCTGTACTTGAAAGCATTGTTGCGAGGACCGTTCGACAGATTGAAACAACAAAAGAAAATATCCGTTTAGTTGGCCTATCTGCTACTCTACCAAATTATGAGGATGTGGCATTATTCCTGAGGGTTGACTTGGATAAGGGGCTATTCTACTTTGACAACAGCTATAGGCCTTGTCCCCTTGCACAGCAGTACATTGGAATTAACATAAAGAAGCCCCTGCAGAGGTTCCAGCTGATGAATGATATTTGTTATGAGAAGGTGATGGCTGTGGCAGGAAAGCACCAGGTTCTTGTTTTTGTCCACTCAAGGAAAGAGACAGCAAAGACTGCTCGAGCAATTAGGGATACGGCGTTAGCTAATGACACGCTTGGCAGATTTTTGAAAGAAGATAGTGCAAGTCGTGAGATTCTTCATACTCATACTGATTTGGTGAAGAGCAATGACCTGAAAGACCTCCTACCTTATGGTTTTGCTATTCATCATGCTGGGATGGCAAGGGCTGACCGCCAGCTTGTTGAGGATCTCTTTGCTGATGGTCATGTGCAAGTCTTGGTTTCGACAGCAACTCTAGCTTGGGGTGTCAACCTTCCTGCTCATACAGTAATTATCAAGGGGACTCAGATTTATAATCCAGAAAAAGGAGCCTGGACCGAATTGAGTCCTCTGGATGTTATGCAGATGCTCGGTCGTGCTGGTAGACCGCAGTATGATACTTATGGAGAGGGAATAATCATTACTGGCCATACTGAATTGCAGTTTTACCTTTCTTTGATGAACCAACAGCTTCCTATTGAAAGCCAGTTTATATCAAGGTTGGCGGATCAGTTGAATGCGGAAATTGTCCTTGGGACTGTGCAAAATGCTAGAGAAGCCTGCAATTGGATTGGTTACACATATCTTTACATCAGGATGTTACGTAATCCTACTCTATATGGCTTAGCTCCTGATGCACTGGACAAGGACATTACACTGGAGGAGAGAAGAGCAGATCTGGTGCATTCTGCAGCAACTATTTTGGACAAGAATAACTTGGTAAAATATGACCGGAAGAGTGGATACTTCCAGGTCACTGACTTGGGTCGGATTGCAAGTTACTATTACATAACGCATGGGACGATATCCACATATAATGAGCACTTGAAGCCAACTATGGGTGACATAGAGCTTTGCCGGTTATTCTCCCTTAGTGAGGAATTTAAATATGTGACTGTCAGGCAAGATGAGAAGATGGAACTGGCCAAGCTTTTGGACCGTGTTCCCATCCCTATTAAAGAGAGCCTTGAAGAGCCCAGTGCTAAGATTAATGTTCTACTTCAAGCATACATTTCTCAGTTGAAGCTTGAAGGCCTATCACTGACCTCCGACATGGTTTATATAACACAGAGTGCAGCTCGTCTTTTACGAGCACTTTTTGAAATAGTGTTGAAAAGAGGATGGGCTCAATTGGCTGAGAAAGCATTGAATCTGTGCAAAATGGTTCAGAAGAGAATGTGGAGTGTGCAGACACCACTGCGTCAATTTGCTGGGATTCCTAAAGATATCCTGAATAAATTGGAGAGAAAGGATCTAGCTTGGGAAAGGTACTATGATCTTTCTCCACAAGAGCTTGGGGAGCTCATTCGGTACCCCAAGATGGGAAGAACTCTTCATAAATTCATTCACCAGTTCCCAAAGCTCAACCTTGCTGCTCATGTCCAGCCGATTACCCGTTCAGTTTTGGGAGTTGAGCTTACCATTACACCTGATTTCCAGTGGGATGACAAGGTTCATGGTTATGTGGAACCTTTCTGGGTTGTTGTGGAGGATAATGATGGTGAATACATACTTCATCATGAATACTTTATGCTGAAAAAGCAGTATATTGATGAGGACCATACACTGAATTTTACTGTACCAATATCTGAGCCTCTGCCCCCTCAGTATTTCATTCGTGTTGTCTCAGATAGGTGGTTAGGATCGCAGACTGTTTTACCTGTTTCATTCAGGCACCTTATTTTGCCTGAGAAATATCCTCCCCCTACTGAGCTATTGGATTTGCAACCACTGCCTGTGACTGCATTAAGAAATCCAAAATATGAAGCTCTTTATCAAGAATTCAGGCACTTCAATCCTGTTCAAACTCAAGTCTTTAATGTTTTGTACAATTCAGATGACAATGTCTTGGTTGCAGCACCGACTGGTAGTGGGAAGACCATATGTGCTGAGTTTGCTATTCTGCGGAATCATCAAAATCTTAAAGGCCCTGAGAGTGTAATGCGTGTTGTCTATATAGCTCCGATTGAAGCTCTGGCAAAAGAAAGGTACCGTGATTGGGAGAGAAAGTTTGCAAAGGTTCTTGGTTTGCAGGTGGTGGAACTAACTGGTGAGACAGCAACTGACTTAAAATTGCTGGAGAAGGGGCAGATAATTATAAGTACCCCTGAGAAATGGGATGCGTTGTCTCGTCGCTGGAAACAGAGGAAAAATGTTCAGCAAGTTAGCCTTTTCATCATTGATGAACTCCACCTGATTGGTGGTCAAGGTGGTCCTGTGTTGGAGGTGATTGTCTCAAGGATGAGATACATAGCAAGTCAAGTGGAGAACAAGATTCGCATTGTTGCTTTGTCGACTTCTCTTGCTAATGCCAAGGATCTTGGTGAATGGATAGGTGCAAGCTCAAATCTATTCAATTTCCCACCAGGGGTTCGTCCAGTTCCTTTGGAGATCCACATACAGGGTGTAGATATTGCTAATTTTGAGGCAAGAATGCAGGCTATGACGAAACCAACATACACAGCTATTGTTCAACATGCAAAGAATGGGAAACCTGCTATTGTGTATGTTCCTACACGGAAGCATGCCTCTCTAACTGCTGTGGATTTGGTTACATATGCTAGTGGAGACAGTGGGGAGAAGCCTATAGTTTTGCTGCATTCATCAGAGGAGATGGAACCCTTTACTGATAAGATCAAGGATTCAACTCTCAAGACGACTCTCGGGTATGGTGTTGGCTTTTTGCATGAAGGTTTGGTTAGCACTGATCAAGAGATTGTTTCTCAGCTTTTTGAAGCTGGATGGATCCAAGTTTGTGTTATGACCAGTTCCATGTGCTGGGGTGTGCCTCTGTTGGCACATTTGGTGGTGGTTATGGGAACTCAGTACTATGATGGGCGAGAGAATGCTCATACAGATTATCCTGTTACTGATCTGTTGCAGATGATGGGCCATGCTAGTCGTCCTTTGGTAGATAACTCTGGGAAGTGTGTCATTCTTTGCCATGCACCACGTAAGGAATACTACAAGAAGTTTTTGTATGAAGCATTCCCGGTGGAGAGCCATTTGCAGCACTTCTTACATGATAATATTAATGCAGAAGTAGTGGTTGGAGTTATTGAGAATAAGCAGGATGCTGTAGACTATCTCACGTGGACATTCATGTATAGGAGGCTTACTCAGAATCCCAACTATTATAATCTTCAGGGTGTCAGTCATAGGCATCTTTCAGATTACCTGTCTGAGCTTGTGGAGAACACGCTAAGTGATTTGGAAGCGAGTAAATGTGTGGCAATTGAAGATGATACTGATCTTTCTCCTTTGAACCTTGGCATGATAGCATCATATTACTACATCAGTTACACAACAATTGAACGTTTTAGTTCTTCCTTGACATCTAAGACGAAATTGAAGGGTCTGTTGGAGATACTGGCCTCAGCCTCTGAGTATTCTCAACTTCCTGTGCGGCCTGGGGAAGAGGAGTTGATTCGTAAGTTGGTTCATCATCAGAGATTCTCGTTTGAGAATCCCAAGTACACAGATCCACATGTAAAAGCAAATGTACTGCTGCAAGCTCACTTTTCGAGGCATCCAGTTGGTGGCAACTTGGCTGCTGACCAACGTGAAGTGCTCCTCTCTGCTGGTAGATTGCTTCAAGCTATGGTTGATGTTATTTCCAGCAGTGGGTGGCTAAGTCTTGCTCTTCTTGCAATGGAAGTAAGCCAGATGGTGACACAAGGTATGTGGGAGCGTGATTCCATGCTTTTGCAGCTGCCACATTTCACAAAGGAATTGGCTAAGAGATGCCAAGAGAACCCTGGGAAGCCAATTGAGACTGTATTTGACCTTGTTGAAATGGAGGATGATGAGCGGAAGGAGCTTCTCCAGATGTCTGATTCTCATTTGCTTGATATTGCACGCTTCTGCAACCGTTTTCCAAACATTGATATGACTTATGATGTGGTGGATGCTGATGATGTGAGGGCTGGAGAAGATGTGACCATGGTGGTTACCCTTGAACGGGACCTCGAAGGGAGGTCAGAGGTGGGGCCTGTCGATGGTCCTAGATATCCGAAAGCAAAAGAAGAGGGGTGGTGGCTGGTAGTGGGTGACACAAAGAGCAACCAGTTGCTGGCTATCAAGAGGGTTGCCTTGCAGAAGAAATCCAAAGTGAAGCTTGAATTTAATGCACCTGCTGAAGCTGGAAAGAAGACATATACTCTGTATTTCATGTGTGACTCTTACTTGGGATGCGACCAAGAGTACAATTTTACTGTTGATGTTAAAGATGAAGCAGCTGGTGGAGATGATAGCGGGAGGGAGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_90651.p1 GENE.S_Transcript_90651~~S_Transcript_90651.p1 ORF type:complete len:2178 (+),score=594.62,Sec63|PF02889.12|1.8e-113,Sec63|PF02889.12|2.6e-99,DEAD|PF00270.25|1.1e-28,DEAD|PF00270.25|1.8e-24,DEAD|PF00270.25|2.1e+03,ResIII|PF04851.11|1e-12,ResIII|PF04851.11|1.5e-10,Helicase_C|PF00271.27|2.6e+03,Helicase_C|PF00271.27|4e-09,Helicase_C|PF00271.27|7.8,AAA_22|PF13401.2|0.048,AAA_22|PF13401.2|0.0018 S_Transcript_90651:160-6693(+)
MSNLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLHGKIDPKSFGDRAARGRPPELDEKLKKSSKKKKERELLAEPGPTRQTKKRRLQEESVLTVTDEGVYQPKTKETQAAYEAMLNVIQLQLGGQPLNIVSAAADEILAVLKNDAIKNPDKKKEIEKLLNPISSSVFDNLVSIGKMITDYQEGGEGAPLANGDGALDDEMGVAVEFEENEDDEDESDLDLVQEDEEEDEDLAEPGRSGAMQMGGIDDEDMKDADEGMNLNVQDIDAYWLQRKISQAYDQQIDPQQCQKLAEEVLKILAEGDDREVETKLLMHLDFDKFSLIKFLLRNRRKVVWCTRLARAEDQEERKKIEEEMMESGSDLAAILEQLHATRATAKERQKNLEKSIREEARRLKDESVADGDSGRRGLAERDGESGWLNGQRQLLDLESIAFQQGGRFMANKKTTLPDGSYRHQAKGYEEVHIPALKAKALQPGEELVKISSMPEWAQPAFKGMTQLNRVQSKVYETALFSADNILLCAPTGAGKTNVAVLTILQQIALNRAPDGSFNHNSYKIVYVAPMKALVAEVVGNLSNRLQHYGVNVKELSGDQSLTKQQIDETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKENIRLVGLSATLPNYEDVALFLRVDLDKGLFYFDNSYRPCPLAQQYIGINIKKPLQRFQLMNDICYEKVMAVAGKHQVLVFVHSRKETAKTARAIRDTALANDTLGRFLKEDSASREILHTHTDLVKSNDLKDLLPYGFAIHHAGMARADRQLVEDLFADGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQYDTYGEGIIITGHTELQFYLSLMNQQLPIESQFISRLADQLNAEIVLGTVQNAREACNWIGYTYLYIRMLRNPTLYGLAPDALDKDITLEERRADLVHSAATILDKNNLVKYDRKSGYFQVTDLGRIASYYYITHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPIKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVYITQSAARLLRALFEIVLKRGWAQLAEKALNLCKMVQKRMWSVQTPLRQFAGIPKDILNKLERKDLAWERYYDLSPQELGELIRYPKMGRTLHKFIHQFPKLNLAAHVQPITRSVLGVELTITPDFQWDDKVHGYVEPFWVVVEDNDGEYILHHEYFMLKKQYIDEDHTLNFTVPISEPLPPQYFIRVVSDRWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPKYEALYQEFRHFNPVQTQVFNVLYNSDDNVLVAAPTGSGKTICAEFAILRNHQNLKGPESVMRVVYIAPIEALAKERYRDWERKFAKVLGLQVVELTGETATDLKLLEKGQIIISTPEKWDALSRRWKQRKNVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSNLFNFPPGVRPVPLEIHIQGVDIANFEARMQAMTKPTYTAIVQHAKNGKPAIVYVPTRKHASLTAVDLVTYASGDSGEKPIVLLHSSEEMEPFTDKIKDSTLKTTLGYGVGFLHEGLVSTDQEIVSQLFEAGWIQVCVMTSSMCWGVPLLAHLVVVMGTQYYDGRENAHTDYPVTDLLQMMGHASRPLVDNSGKCVILCHAPRKEYYKKFLYEAFPVESHLQHFLHDNINAEVVVGVIENKQDAVDYLTWTFMYRRLTQNPNYYNLQGVSHRHLSDYLSELVENTLSDLEASKCVAIEDDTDLSPLNLGMIASYYYISYTTIERFSSSLTSKTKLKGLLEILASASEYSQLPVRPGEEELIRKLVHHQRFSFENPKYTDPHVKANVLLQAHFSRHPVGGNLAADQREVLLSAGRLLQAMVDVISSSGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFTKELAKRCQENPGKPIETVFDLVEMEDDERKELLQMSDSHLLDIARFCNRFPNIDMTYDVVDADDVRAGEDVTMVVTLERDLEGRSEVGPVDGPRYPKAKEEGWWLVVGDTKSNQLLAIKRVALQKKSKVKLEFNAPAEAGKKTYTLYFMCDSYLGCDQEYNFTVDVKDEAAGGDDSGRE*

Click here to download the sequence:
Link to NCBI Protein BLAST