Transcript Information: S_Transcript_90772.p1


Annotated TAIR IDAT5G15920.1
Annotated Gene Namestructural maintenance of chromosomes 5
Annotated Gene Symbol(s)SMC5
Annotation TypeOrtholog
Chromosome Positionchr5:5196210-5199559 | Forward length=1053
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 18.1963996199605
Replicate 29.5213939725397
Replicate 39.098650216149
Condition 2: 8 Hour
Replicate 112.14249885928
Replicate 211.653776667842
Replicate 311.711558855208
Condition 3: 24 Hour
Replicate 19.7595962362921
Replicate 28.531244661819
Replicate 39.3503776787027


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_90772.p1 GENE.S_Transcript_90772~~S_Transcript_90772.p1 ORF type:complete len:1052 (+),score=233.64,SMC_N|PF02463.15|7.2e-24,AAA_23|PF13476.2|8.7e-10,AAA_23|PF13476.2|1.6e+04,AAA_21|PF13304.2|2.1e-05,AAA_21|PF13304.2|1.3e+03,AAA_21|PF13304.2|8.8e+02,AAA_21|PF13304.2|7.2,AAA_29|PF13555.2|1.8e-05 S_Transcript_90772:1147-4302(+)
ATGTCTGAACGGCGTTCAAAACGTCCCAAACTTAACAGAGGGGAAGATGGTTATTTGCCTGGAAACATAACTGAGATTGAGCTCCATAACTTCATGACGTTTAATCAGTTGAAATGCAAGCCTGGTTCGCGTTTAAACCTGGTCATCGGTCCTAACGGCTCCGGAAAAAGCTCTCTTGTATGCGCCATTGCCCTCGGTCTTGGTGGTGATCCTCAGATACTCGGAAGAGCAGGAAGTATTGGAGCATTTGTGAAGCGAGGAGAGGAGTCTGGACATATCAAGATCATGTTGAGAGGTGACACTAGAGAAGAACACATTAGCATTACTCGTAAGATAGATACGAGTAACAAGTCAGAGTGGTTATTAAATGGGAAAGTGGCACCAAAGAAGGATGTTATTGAAGTTGTCCAGCGGTTTAATATCCAAGTCAACAATTTGACTCAGTTTCTACCGCAAGACAAAGTTTGCGAGTTTGCCAAGTTAACTCCTGTCGATCTGTTACGTGCAACAGAAAATGCCATTGGTGATCCTCGATTACCAATGCAACATGATGCTCTTATAGAGAAAAGTGGTCAGCTGGGGAGACTTCAAAGAGCTGTTGATGGTAATAAAGAGATGTTAAATCAGCTCAAGGCACAACATGCTGAACAGGAACGAGATGTTGAACGAGTTCGTCAGAGAGAAGAACTTCTAGATCAGGTTGAGTTAATGAAGAAGAAATTGCCTTGGCTGAAGTATGATTTGAAGAAGGCTGATTACGTGGAAGCAAAAAAGCAGGAAGCTGATTCAAGGAGAAAATTTGATGAAGCTGCAAAGTTATTAAATGATCTTAAATTACCTATTGAGAAGCAGAAACAAGAAAAAGCAATAAAGGAGTCTAAGTGCAAAAATTCGAATAATGTTTTGACTAATAGTGCCCAAAGGTGCCAGCAACTTCAAGACAGAGAAAATCAGTTGGGAGTACAAGTAGCTGGAAAATACAGGGAAATTGAAGATTTGAAGAAGCAAGAAGAGTCTCGTAAACAAAGGATTCTGAAAGCTAAAGAGGATCTTGCTGCTGCGGAACTGGAATTTACAAACCTGCCACCTTATGACTTTCCAAAGGATGAATATGATAGATTTAAGAATCAAATTGTAGAACTTGAAGCCAATGCAAAACAGATTCGGGGACAAAAGTTCGATAAGGAGAAACTTTTAGGGGCGAACAGAAGAAATCTGACACAATTGGTGGGCAGGTTAAAAGATATGGAGAATAGAAATTCTAAGCTACTCTACGAGCTGCGTAAATCTGGGGCAGATAAAATCGTTGACGCTTATCGTTGGTTGCAAGAAAATCGCGATCAGTTAAAGAGAGAGGTTTACGGACCTGTTCTTCTTGAGGTTACTATCAAGGACCGATCTCATGCAGAATACTTGGAATCTCATGTTCCACATTATGTTTGGAGGTCCTTCATTGCTCAGGATCCTAGTGACCGAGATTTTCTTTTCAGAAACATGAAGTCCTTTGAAATTCCAGTCCTAAATTATGTAAGGACTAAAGAAAATAGTAGAGCCTTACCACAAATATCTGATCAGATGCTTAAGCTTGGAATATATACTCGGCTGGACCAAGTCTTTGATGCTCCTGCTGCAGTCAAAGAGGTTTTAATTAGTCAGTGTGGACTTGACTACTCATACATTGGTACAGAAGAAACTGACCAGAGGGCAGATGAGGTTGCAAAGTTGGGAATACTTGACTTTTGGACTCCAGCTAATCATTATGGTTGGTCCAAATCTCGATATTCTCAGCATGTCGCCGCTAGTGTGGAGCCAGTTCCTCCCTCTAGACTTCTTTCATGCAGCTCAGACAATACAGAAATTGAGTCTCTTAGGTCCAGGAAAGATGAACTTGAACAGACAATAAGAGAATTTGACGAGATTATTAAATCACTTCAGTTTAAGTTAAACCAGACTGAAAATGAAGCTGCGAAATTTCATAAACAGAGGGAAGAAATTTTCAACAGGGCACAACATGAGAAGAAGAAGCGGAAGGAGATGGAAAACCGTATCAACCAGAGGAGAACAAGATTAAAATCCATTGAGGAGGAGGGAGATGTTGACAGTCAGATGGTCGGCCTTGCTGATCAAGCTGCAAATTTGAATGTCCAGAGGCTTAGAAATGCATTTCATATTAAGGATTTAATTGCGGAAGCTCTTTCACACACATGGAGTTATGCAGAAAGGCACTTTTGTGCTCTTGAAATTGATGCAAAGATTCGAGAGGCTGAAGTAGAAATTAAGCAGCAAGAAAGCTTTGCTCTGCAAGCGACCATGCACTTGCAGCAATGCACCATAGGAGTGGAACGTTGTAGGGAGATGCTTTCAGATGCCAAGAAATATGCAGAATCAATTGCAAAGATCACTCCTGAACTTGAGAAGGCATTTGTTGAGATGCCTGCTACAATTGAGGAGCTTGAGGCTGCAATTCAAGATAATTTAGGTCAAGCTAGTTCTATTCTCCTCCTAAATCAAAATGTTTTAGCAGAATATGAAATGCGACAAAGAAAGATTGATGCCCTTGCAAAAACACTTGACGAAGAGGAGCAGGAATTACAGTCCCGTGTGGGTGAAATGGAAGCGTTGAAGGGTAGCTGGCTTCCGACTTTACGGAATCTTGTTTCTCAGATCAATGGGACATTCAGTCGTAACTTTCAAGAGATGGCTGTTGCTGGGGAAGTATCATTAGATGAGCATGACATGGACTTTGGTGCATATGGTATTGTTATTAAAGTGAAGTTCAGGCAAGCTGGACAACTTCAAGTTCTTAGCGCTCATCACCAATCTGGCGGGGAGCGTTCAGTTTCTACCATACTGTATCTTGTTTCTCTCCAAGATCTTACAAATTGTCCATTTAGAGTTGTTGATGAAATTAATCAAGGAATGGACCCTATCAATGAGAGAAAGATGTTTCAGCAGTTGGTGAGAGCCGCTAGCCAGCCAAATACACCACAGTGCTTTTTGCTTACACCAAAATTGCTGCCAGACCTAGACTATAGTGAAGCTTGCAGCGTCCTGAATATCATGAATGGGCCATGGATTGAACAGCCTGCTCAGTTATGGAGCAATGGAGAATGCTGGAGCACTGTCACCAGAAAACTGGGGCAAACTCAATGCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_90772.p1 GENE.S_Transcript_90772~~S_Transcript_90772.p1 ORF type:complete len:1052 (+),score=233.64,SMC_N|PF02463.15|7.2e-24,AAA_23|PF13476.2|8.7e-10,AAA_23|PF13476.2|1.6e+04,AAA_21|PF13304.2|2.1e-05,AAA_21|PF13304.2|1.3e+03,AAA_21|PF13304.2|8.8e+02,AAA_21|PF13304.2|7.2,AAA_29|PF13555.2|1.8e-05 S_Transcript_90772:1147-4302(+)
MSERRSKRPKLNRGEDGYLPGNITEIELHNFMTFNQLKCKPGSRLNLVIGPNGSGKSSLVCAIALGLGGDPQILGRAGSIGAFVKRGEESGHIKIMLRGDTREEHISITRKIDTSNKSEWLLNGKVAPKKDVIEVVQRFNIQVNNLTQFLPQDKVCEFAKLTPVDLLRATENAIGDPRLPMQHDALIEKSGQLGRLQRAVDGNKEMLNQLKAQHAEQERDVERVRQREELLDQVELMKKKLPWLKYDLKKADYVEAKKQEADSRRKFDEAAKLLNDLKLPIEKQKQEKAIKESKCKNSNNVLTNSAQRCQQLQDRENQLGVQVAGKYREIEDLKKQEESRKQRILKAKEDLAAAELEFTNLPPYDFPKDEYDRFKNQIVELEANAKQIRGQKFDKEKLLGANRRNLTQLVGRLKDMENRNSKLLYELRKSGADKIVDAYRWLQENRDQLKREVYGPVLLEVTIKDRSHAEYLESHVPHYVWRSFIAQDPSDRDFLFRNMKSFEIPVLNYVRTKENSRALPQISDQMLKLGIYTRLDQVFDAPAAVKEVLISQCGLDYSYIGTEETDQRADEVAKLGILDFWTPANHYGWSKSRYSQHVAASVEPVPPSRLLSCSSDNTEIESLRSRKDELEQTIREFDEIIKSLQFKLNQTENEAAKFHKQREEIFNRAQHEKKKRKEMENRINQRRTRLKSIEEEGDVDSQMVGLADQAANLNVQRLRNAFHIKDLIAEALSHTWSYAERHFCALEIDAKIREAEVEIKQQESFALQATMHLQQCTIGVERCREMLSDAKKYAESIAKITPELEKAFVEMPATIEELEAAIQDNLGQASSILLLNQNVLAEYEMRQRKIDALAKTLDEEEQELQSRVGEMEALKGSWLPTLRNLVSQINGTFSRNFQEMAVAGEVSLDEHDMDFGAYGIVIKVKFRQAGQLQVLSAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLDYSEACSVLNIMNGPWIEQPAQLWSNGECWSTVTRKLGQTQC*

Click here to download the sequence:
Link to NCBI Protein BLAST