Transcript Information: S_Transcript_90779.p2


Annotated TAIR IDAT5G15920.1
Annotated Gene Namestructural maintenance of chromosomes 5
Annotated Gene Symbol(s)SMC5
Annotation TypeOrtholog
Chromosome Positionchr5:5196210-5199559 | Forward length=1053
E-Value2.5E-85
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.64516366630741
Replicate 20
Replicate 31.1177415808243
Condition 2: 8 Hour
Replicate 10.90471352860564
Replicate 22.0338044217933
Replicate 33.488047789906
Condition 3: 24 Hour
Replicate 10.79435939965797
Replicate 20
Replicate 31.0700261262777


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_90779.p2 GENE.S_Transcript_90779~~S_Transcript_90779.p2 ORF type:complete len:165 (+),score=20.31,SMC_N|PF02463.15|1.1e-16,AAA_23|PF13476.2|4.8e-15,AAA_21|PF13304.2|8.2e-07,AAA_29|PF13555.2|1.3e-06 S_Transcript_90779:1147-1641(+)
ATGTCTGAACGGCGTTCAAAACGTCCCAAACTTAACAGAGGGGAAGATGGTTATTTGCCTGGAAACATAACTGAGATTGAGCTCCATAACTTCATGACGTTTAATCAGTTGAAATGCAAGCCTGGTTCGCGTTTAAACCTGGTCATCGGTCCTAACGGCTCCGGAAAAAGCTCTCTTGTATGCGCCATTGCCCTCGGTCTTGGTGGTGATCCTCAGATACTCGGAAGAGCAGGAAGTATTGGAGCATTTGTGAAGCGAGGAGAGGAGTCTGGACATATCAAGATCATGTTGAGAGGTGACACTAGAGAAGAACACATTAGCATTACTCGTAAGATAGATACGAGTAACAAGTCAGAGTGGTTATTAAATGGGAAAGTGGCACCAAAGAAGGATGTTATTGAAGTTGTCCAGCGGTTTAATATCCAAGTCAACAATTTGACTCAGAAAATGCCATTGGTGATCCTCGATTACCAATGCAACATGATGCTCTTATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_90779.p2 GENE.S_Transcript_90779~~S_Transcript_90779.p2 ORF type:complete len:165 (+),score=20.31,SMC_N|PF02463.15|1.1e-16,AAA_23|PF13476.2|4.8e-15,AAA_21|PF13304.2|8.2e-07,AAA_29|PF13555.2|1.3e-06 S_Transcript_90779:1147-1641(+)
MSERRSKRPKLNRGEDGYLPGNITEIELHNFMTFNQLKCKPGSRLNLVIGPNGSGKSSLVCAIALGLGGDPQILGRAGSIGAFVKRGEESGHIKIMLRGDTREEHISITRKIDTSNKSEWLLNGKVAPKKDVIEVVQRFNIQVNNLTQKMPLVILDYQCNMMLL*

Click here to download the sequence:
Link to NCBI Protein BLAST