Transcript Information: S_Transcript_90837.p1


Annotated TAIR IDAT3G17040.1
Annotated Gene Namehigh chlorophyll fluorescent 107
Annotated Gene Symbol(s)HCF107
Annotation TypeOrtholog
Chromosome Positionchr3:5809378-5812605 | Reverse length=652
E-Value1.1E-278
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 155.471035966475
Replicate 253.819247637664
Replicate 354.809607587643
Condition 2: 8 Hour
Replicate 115.741061394017
Replicate 215.019413322277
Replicate 315.396860045074
Condition 3: 24 Hour
Replicate 155.55280564304
Replicate 254.409080163955
Replicate 358.334288993204


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_90837.p1 GENE.S_Transcript_90837~~S_Transcript_90837.p1 ORF type:complete len:569 (+),score=161.21,TPR_2|PF07719.13|12,TPR_2|PF07719.13|2.9e+03,TPR_2|PF07719.13|43,TPR_2|PF07719.13|0.016,TPR_2|PF07719.13|0.0086,TPR_2|PF07719.13|0.082,TPR_2|PF07719.13|5.9,TPR_2|PF07719.13|6e+02,TPR_2|PF07719.13|0.011,TPR_2|PF07719.13|1.1e+02,TPR_14|PF13428.2|0.24,TPR_14|PF13428.2|0.011,TPR_14|PF13428.2|1.6,TPR_14|PF13428.2|1.3e+02,TPR_14|PF13428.2|0.00049,TPR_14|PF13428.2|0.034,TPR_14|PF13428.2|42,TPR_14|PF13428.2|0.074,TPR_14|PF13428.2|1.1e+02,TPR_16|PF13432.2|2.1,TPR_16|PF13432.2|6.6e-05,TPR_16|PF13432.2|0.0043,TPR_16|PF13432.2|0.00017,TPR_16|PF13432.2|0.021,TPR_16|PF13432.2|0.0099,TPR_11|PF13414.2|0.031,TPR_11|PF13414.2|0.22,TPR_11|PF13414.2|7.1e-05,TPR_11|PF13414.2|1.1e+02,TPR_11|PF13414.2|0.0029,TPR_12|PF13424.2|0.035,TPR_12|PF13424.2|2.1e+02,TPR_12|PF13424.2|0.00013,TPR_12|PF13424.2|1.3e+02,TPR_12|PF13424.2|65,TPR_12|PF13424.2|9.7e-05,TPR_19|PF14559.2|0.62,TPR_19|PF14559.2|0.0025,TPR_19|PF14559.2|0.022,TPR_19|PF14559.2|0.12,TPR_19|PF14559.2|1.2e+04,TPR_19|PF14559.2|8.9,TPR_19|PF14559.2|1.5e+03,TPR_17|PF13431.2|7.2e+02,TPR_17|PF13431.2|1,TPR_17|PF13431.2|9.8e+03,TPR_17|PF13431.2|5.6e+02,TPR_17|PF13431.2|0.12,TPR_17|PF13431.2|19,TPR_17|PF13431.2|12,TPR_17|PF13431.2|3e+02,TPR_17|PF13431.2|4.5e+02,TPR_17|PF13431.2|4.3e+02,TPR_17|PF13431.2|1.1e+03,TPR_1|PF00515.24|21,TPR_1|PF00515.24|6.8e+02,TPR_1|PF00515.24|2.6,TPR_1|PF00515.24|0.74,TPR_1|PF00515.24|60,TPR_1|PF00515.24|3.9e+02,TPR_1|PF00515.24|1.4e+03,TPR_1|PF00515.24|0.18,TPR_1|PF00515.24|3.8e+03,TPR_8|PF13181.2|2.3,TPR_8|PF13181.2|1e+04,TPR_8|PF13181.2|1.6e+02,TPR_8|PF13181.2|6.3,TPR_8|PF13181.2|54,TPR_8|PF13181.2|5.5e+02,TPR_8|PF13181.2|5.3e+03,TPR_8|PF13181.2|20,TPR_6|PF13174.2|25,TPR_6|PF13174.2|4.5e+02,TPR_6|PF13174.2|54,TPR_6|PF13174.2|71,TPR_6|PF13174.2|73,TPR_6|PF13174.2|9.4e+02,TPR_6|PF13174.2|23,TPR_6|PF13174.2|1.1e+03,TPR_15|PF13429.2|1.2e+03,TPR_15|PF13429.2|4.1,TPR_15|PF13429.2|0.095,TPR_15|PF13429.2|0.00035,TPR_10|PF13374.2|1.3,TPR_10|PF13374.2|1.1e+03,TPR_10|PF13374.2|55,TPR_10|PF13374.2|70,TPR_10|PF13374.2|7.6e+02,TPR_10|PF13374.2|35,TPR_10|PF13374.2|65 S_Transcript_90837:26-1708(+)
ATGGACGGCGGAGATGAAAGCAGTGATGATGAAGATATTGATGATGATGATGATGATGATGATGAAGAGAAGAGAGAAAAGTCAGTTTTTGATGAGAGTTTGGAGAAGTTTGCAAAGAAGTTGCCTATGTTTGAGCCTGGTAGAGGTGGTCAAAGTGCTCAAGATAATGGAGGTGTTACCAAGGAGCAGCCATTGAAGGTGAACTTGGATTTGGCTTTGTATAAAGCTAAGATTCTTACTAGGAACTTCCAGTTTCAAGAGGCTGAAAAGATACTTCAGCAGTGTATTGAATATTGGCCTGAAGATGGAAGGCCATATGTAGCCTTGGGAAAGGTAATGAGGAAGCAATCAAGAGTATCAGAAGTAAGATCAGTGTATGAGAAAGGCTCTCAGGCTACTCAGGGAGAAAATGCCTTCATTTGGCAGTGTTGGGCTGTGTTGGAAAATGAGATGGGAAATGTAAGGAAAGCCCGGGAACTATTTGATGCGGCAACAGTAGCTGATAAGAAGCACATTGCAGCCTGGCATGGATGGGCAGTTTTGGAGTTGAAACAAGGAAATATTAAGAAGGCTAGAAATCTGCTTGGCAAAGCTATTAAATACTGTGGTGGAAATGAGTACGTATATCAGACACTTGCATTGCTCGAAGCTAAGGCTAATCGATATGAGCAGGCTCAGTATTTGTTCAGACAGGCCACCAAATGTAACCCGAAAAGTTGTGCTAGCTGGCTTGCATGGGCACAGTTAGAGATGCGGCAAGAGAACAATCCAGCTGCCCGATTTCTGTTTGAGAAAGCTGTCCAGGCTAGCCCAAAGAACAGATTTGCTTGGCATGTATGGGGGTTGTTTGAGGCTAATCTTGGAAACATTGATAAAGCAAGAAAACTTCTAAAAATAGGCCATCTTGTCAATCCAAGGGATCCTGTTCTTCTTCAGTCTCTTGCTTTGCTGGAGTACAAACATTCCACTGCGAATGTTTCCAGGGTGCTATTCAGGAGAGCATCAGAATTGGATCCGAGGCACCAACCCGTATGGATTGCTTGGGGATGGATGGAGTGGAAGGAGGGAAATATATCTACGGCAAGGGAACTGTATCAAAGAGCATTGTCGATCAATTCCACTAGTGAAAGTGCTGCTCGTTGCCTTCAGGCATGGGGAGTCTTGGAACAAAGAGTTGGCAATATGTCAGCGGCTAGGAGATTATTCAGATCATCACTGAACATAAATTCGCAGAGCTATGTGACGTGGATGACTTGGGCATCTTTGGAGGAAGATCAAGGAAATTCTGTCCGCGCTGAGGAAATCCGTAACCTCTATTTCCAGCAGCGCACAGAAGTGGTAGACGATGCTTCATGGGTGATGGGGTTCATGGACATAATTGATCCTGCACTCGACAGCATAAAGAGGCTCTTGAACTTAGAGGACAATCCATTCTACAAGAAACCAGAGTTATCGGAGAACACAACTACGACTGAGGAGGCTAAGGATAAAGACGAGGAATCCTCTGAAGGCCAAAGCTTCAAGAGGAGCAACAGCAGTGGTTTTGATTTGGATGCATTCATCAAAGAGAAGTTGTCGCTTGATCCAACAAATCTTGACAACCAAATGGAAACATCTTTAACATCCATTGCGAGAGCTAAGGAGGCCAAAAAGCCTTGGAGATCAAGGCAAAAATCACAATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_90837.p1 GENE.S_Transcript_90837~~S_Transcript_90837.p1 ORF type:complete len:569 (+),score=161.21,TPR_2|PF07719.13|12,TPR_2|PF07719.13|2.9e+03,TPR_2|PF07719.13|43,TPR_2|PF07719.13|0.016,TPR_2|PF07719.13|0.0086,TPR_2|PF07719.13|0.082,TPR_2|PF07719.13|5.9,TPR_2|PF07719.13|6e+02,TPR_2|PF07719.13|0.011,TPR_2|PF07719.13|1.1e+02,TPR_14|PF13428.2|0.24,TPR_14|PF13428.2|0.011,TPR_14|PF13428.2|1.6,TPR_14|PF13428.2|1.3e+02,TPR_14|PF13428.2|0.00049,TPR_14|PF13428.2|0.034,TPR_14|PF13428.2|42,TPR_14|PF13428.2|0.074,TPR_14|PF13428.2|1.1e+02,TPR_16|PF13432.2|2.1,TPR_16|PF13432.2|6.6e-05,TPR_16|PF13432.2|0.0043,TPR_16|PF13432.2|0.00017,TPR_16|PF13432.2|0.021,TPR_16|PF13432.2|0.0099,TPR_11|PF13414.2|0.031,TPR_11|PF13414.2|0.22,TPR_11|PF13414.2|7.1e-05,TPR_11|PF13414.2|1.1e+02,TPR_11|PF13414.2|0.0029,TPR_12|PF13424.2|0.035,TPR_12|PF13424.2|2.1e+02,TPR_12|PF13424.2|0.00013,TPR_12|PF13424.2|1.3e+02,TPR_12|PF13424.2|65,TPR_12|PF13424.2|9.7e-05,TPR_19|PF14559.2|0.62,TPR_19|PF14559.2|0.0025,TPR_19|PF14559.2|0.022,TPR_19|PF14559.2|0.12,TPR_19|PF14559.2|1.2e+04,TPR_19|PF14559.2|8.9,TPR_19|PF14559.2|1.5e+03,TPR_17|PF13431.2|7.2e+02,TPR_17|PF13431.2|1,TPR_17|PF13431.2|9.8e+03,TPR_17|PF13431.2|5.6e+02,TPR_17|PF13431.2|0.12,TPR_17|PF13431.2|19,TPR_17|PF13431.2|12,TPR_17|PF13431.2|3e+02,TPR_17|PF13431.2|4.5e+02,TPR_17|PF13431.2|4.3e+02,TPR_17|PF13431.2|1.1e+03,TPR_1|PF00515.24|21,TPR_1|PF00515.24|6.8e+02,TPR_1|PF00515.24|2.6,TPR_1|PF00515.24|0.74,TPR_1|PF00515.24|60,TPR_1|PF00515.24|3.9e+02,TPR_1|PF00515.24|1.4e+03,TPR_1|PF00515.24|0.18,TPR_1|PF00515.24|3.8e+03,TPR_8|PF13181.2|2.3,TPR_8|PF13181.2|1e+04,TPR_8|PF13181.2|1.6e+02,TPR_8|PF13181.2|6.3,TPR_8|PF13181.2|54,TPR_8|PF13181.2|5.5e+02,TPR_8|PF13181.2|5.3e+03,TPR_8|PF13181.2|20,TPR_6|PF13174.2|25,TPR_6|PF13174.2|4.5e+02,TPR_6|PF13174.2|54,TPR_6|PF13174.2|71,TPR_6|PF13174.2|73,TPR_6|PF13174.2|9.4e+02,TPR_6|PF13174.2|23,TPR_6|PF13174.2|1.1e+03,TPR_15|PF13429.2|1.2e+03,TPR_15|PF13429.2|4.1,TPR_15|PF13429.2|0.095,TPR_15|PF13429.2|0.00035,TPR_10|PF13374.2|1.3,TPR_10|PF13374.2|1.1e+03,TPR_10|PF13374.2|55,TPR_10|PF13374.2|70,TPR_10|PF13374.2|7.6e+02,TPR_10|PF13374.2|35,TPR_10|PF13374.2|65 S_Transcript_90837:26-1708(+)
MDGGDESSDDEDIDDDDDDDDEEKREKSVFDESLEKFAKKLPMFEPGRGGQSAQDNGGVTKEQPLKVNLDLALYKAKILTRNFQFQEAEKILQQCIEYWPEDGRPYVALGKVMRKQSRVSEVRSVYEKGSQATQGENAFIWQCWAVLENEMGNVRKARELFDAATVADKKHIAAWHGWAVLELKQGNIKKARNLLGKAIKYCGGNEYVYQTLALLEAKANRYEQAQYLFRQATKCNPKSCASWLAWAQLEMRQENNPAARFLFEKAVQASPKNRFAWHVWGLFEANLGNIDKARKLLKIGHLVNPRDPVLLQSLALLEYKHSTANVSRVLFRRASELDPRHQPVWIAWGWMEWKEGNISTARELYQRALSINSTSESAARCLQAWGVLEQRVGNMSAARRLFRSSLNINSQSYVTWMTWASLEEDQGNSVRAEEIRNLYFQQRTEVVDDASWVMGFMDIIDPALDSIKRLLNLEDNPFYKKPELSENTTTTEEAKDKDEESSEGQSFKRSNSSGFDLDAFIKEKLSLDPTNLDNQMETSLTSIARAKEAKKPWRSRQKSQ*

Click here to download the sequence:
Link to NCBI Protein BLAST