Transcript Information: S_Transcript_90933.p1


Annotated TAIR IDAT3G53400.1
Annotated Gene NameBEST Arabidopsis thaliana protein match is: conserved peptide upstream open reading frame 47 (TAIR:AT5G03190.1); Has 285 Blast hits to 285 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 279; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:19798526-19799926 | Forward length=466
E-Value1.9E-115
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 123.196839585944
Replicate 225.991153743739
Replicate 317.60269427441
Condition 2: 8 Hour
Replicate 138.147282057977
Replicate 230.153361210066
Replicate 334.290711364535
Condition 3: 24 Hour
Replicate 116.688948256789
Replicate 218.112280058944
Replicate 321.879992972554


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_90933.p1 GENE.S_Transcript_90933~~S_Transcript_90933.p1 ORF type:complete len:483 (+),score=115.87 S_Transcript_90933:342-1790(+)
ATGATAGTTATGGGTGGTGGGGGATCAAGGAATTCAGTGCCACTCAAGACACTGAAATGGCAAGCCCTATATGGGTCTTTGGCCAAACTATTGGCTATCCGTACGATGATGTTTGCTATTGCTATTTCGATGCTGCCTCTTGTGCAACTTGTCTATGATTTTGACCCAACAAAACCCTTTTTCTTAAGCTCTAATGATGATTGTGAATCTAATAATAATATTGGGTTTTCGGGTCATAATTCTGTGTTGGGTAAGTTTCTAAAACCTGTTACCCCAGTTGCATTTCCACATCTGAGGACTGGAATGTGCAAAGAAAATGTGAATTTGACTGTGGATGTGGTGACTGAGCTTATGAGCAAGAACTTGTTGAATCACGATGCAAAAGCTCTTTGTATTGGACAGGGCTCGGCTGAGGCCGAATTCGCCTTGCATGAAATGGGATTCTTAAATGTTGATGTAATTCATAGGCACCCATTTTTCTCACTCAAGCAAAAGCAACTTATATACGAGCTTAATTTTGATGAAAATTTGTTCAATTTTGTCATTGCAAGAGACCTTAAGAAGGTTTCTGTTCCTGCTCTCCTTGTGAATGAGGTTGAGCGAATTCTTAAGCCTGGTGGGGTTGGGGCTATGCTTGTGGCTAGCCATAATAGCTTGATTAGGTCTGCAACCTCAGTTTCATCCTTCCTCAAGAGCTCCAATGTGGTCCATGTGGTTGGGTTAGGCAACTTTGCTTTGGTTGCATTCAAGAAGAGGGCTAATCATGAATTGGGCTCTTTTGATGAGTTTCGTCTCCCTACAATTTGTCCTTCCATCAAGAGAAACAAGCCCTTTATGAACAACTTGGAGCCTCTTGTTGAGAACAAGGAATCAAGGGGTTATGATATTGATAAGAGAATTGCTTATCTACCACAGTTTGTTGATGTACCCATCAAGGGGAAGAAGTTGATTTATGTCGATATGGGGGCAAAACAAGCTGCAAACTTTAGTGGTGACAATTGGTTCTTGCCCTCTTACCCTATAAACTCAAAAGCATTCAGTGTTTACATTGTTGATCATGATGCTTTAGTTTTGTCTTCTTATGTGAAGACCCCTGGTGTGACCTTCATTTATCATCCAGCACTAGCAGGAAATGTTGTTGAACATGAAATTGGCACTAGTGTTGAAGAGGAGCCACTTCTTGGCGAAGATGAGTTTGACTTCTTTGTGTGGTTCAAAGAAACAGTGGAATTTGCAGATTTTGTGGTCTTAAAGATGAATGTTGGGAAATCTGAAATGAAATTTTTATCAGAATTGTTTGAAAGTGGCATAATATGCTATGTTGATGAGCTCTTCCTGCACTGTCCTGAATCAGACCACAATGGCAATGCTGGTGGAGGTTGCAATACCGATGTCTTAAAGAGCCTAAGAAAGGTTGGTGTGTTTGCCCATCAGTGGTGGGGGAATTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_90933.p1 GENE.S_Transcript_90933~~S_Transcript_90933.p1 ORF type:complete len:483 (+),score=115.87 S_Transcript_90933:342-1790(+)
MIVMGGGGSRNSVPLKTLKWQALYGSLAKLLAIRTMMFAIAISMLPLVQLVYDFDPTKPFFLSSNDDCESNNNIGFSGHNSVLGKFLKPVTPVAFPHLRTGMCKENVNLTVDVVTELMSKNLLNHDAKALCIGQGSAEAEFALHEMGFLNVDVIHRHPFFSLKQKQLIYELNFDENLFNFVIARDLKKVSVPALLVNEVERILKPGGVGAMLVASHNSLIRSATSVSSFLKSSNVVHVVGLGNFALVAFKKRANHELGSFDEFRLPTICPSIKRNKPFMNNLEPLVENKESRGYDIDKRIAYLPQFVDVPIKGKKLIYVDMGAKQAANFSGDNWFLPSYPINSKAFSVYIVDHDALVLSSYVKTPGVTFIYHPALAGNVVEHEIGTSVEEEPLLGEDEFDFFVWFKETVEFADFVVLKMNVGKSEMKFLSELFESGIICYVDELFLHCPESDHNGNAGGGCNTDVLKSLRKVGVFAHQWWGN*

Click here to download the sequence:
Link to NCBI Protein BLAST