Transcript Information: S_Transcript_9244.p1


Annotated TAIR IDAT5G09880.1
Annotated Gene NameSplicing factor, CC1-like
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:3081646-3085179 | Reverse length=527
E-Value8.2E-107
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 127.496420363319
Replicate 228.928802905289
Replicate 325.636168414963
Condition 2: 8 Hour
Replicate 133.97904515261
Replicate 233.882675325727
Replicate 330.956625152463
Condition 3: 24 Hour
Replicate 128.824369087174
Replicate 225.390992222464
Replicate 329.198964269823


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_9244.p1 GENE.S_Transcript_9244~~S_Transcript_9244.p1 ORF type:5prime_partial len:241 (+),score=59.32,RBM39linker|PF15519.2|2e-23,RRM_1|PF00076.18|5.3e-07,RRM_1|PF00076.18|0.00029,RRM_6|PF14259.2|0.011,RRM_6|PF14259.2|4.7e+03,RRM_6|PF14259.2|0.046,RRM_5|PF13893.2|3.7,RRM_5|PF13893.2|0.0015 S_Transcript_9244:1-723(+)
CAGCTACCCCTTGACCTGGAGACAGGACACTGCAAAGGTTTTGGGTTTGTTCAATTCGCTCAAGTTGAACATGCAAAGGCAGCTCAGAGTTTGAATGGTAAATTGGAAATTGCTGGTAGATATATTAAGGTTTCTTCGGTCACTGAACATGTTGGCGGACAAGAAGCTGGTACAAATGCTGCAGATTTTGATGACGATGATGGTGGTGGTTTGGCTTTGAATGCTCGATCTAGAGCATTGCTTATGCAGAAACTGGATCGCACCGGTACAGCTTCGAGCATTGCTGGTACACTTGGTGTAGCTGGGCTTAATGGTTCTGCACCTGTCCAGCAACCCATTCCGCTACCTATCAATGGGCAGGCTGCTATACCGGCCCCTACACTTCCTGGCCAAATTCTTCCTTCTCCACCTTCCGAACCTGTTGGGACCCCAAGCGATTGTTTGTTGTTGAAGAATTTATTCGATCCAGCTACTGAGACTGAACCAGATTTCGACTTGGACATTAAAGAAGATGTTGAGGAGGAATGTTCAAAGTTTGGTCGAGTGAGACATATCTATGTTGACAAGCATAGTGCTGGTCATGTGTATTTACGTTTCGACGACATAGATGCAGCGAAGAGGGCTCAAAATGGAATGCATATGAGATGGTTTGCTCGCAGATTGATTTCAGCTATCTACATGCAACCCCAAGATTATGAAGCCAGGTTCAAAGATTCTGCTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_9244.p1 GENE.S_Transcript_9244~~S_Transcript_9244.p1 ORF type:5prime_partial len:241 (+),score=59.32,RBM39linker|PF15519.2|2e-23,RRM_1|PF00076.18|5.3e-07,RRM_1|PF00076.18|0.00029,RRM_6|PF14259.2|0.011,RRM_6|PF14259.2|4.7e+03,RRM_6|PF14259.2|0.046,RRM_5|PF13893.2|3.7,RRM_5|PF13893.2|0.0015 S_Transcript_9244:1-723(+)
QLPLDLETGHCKGFGFVQFAQVEHAKAAQSLNGKLEIAGRYIKVSSVTEHVGGQEAGTNAADFDDDDGGGLALNARSRALLMQKLDRTGTASSIAGTLGVAGLNGSAPVQQPIPLPINGQAAIPAPTLPGQILPSPPSEPVGTPSDCLLLKNLFDPATETEPDFDLDIKEDVEEECSKFGRVRHIYVDKHSAGHVYLRFDDIDAAKRAQNGMHMRWFARRLISAIYMQPQDYEARFKDSA*

Click here to download the sequence:
Link to NCBI Protein BLAST