Transcript Information: S_Transcript_92540.p1


Annotated TAIR IDAT5G18950.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:6328519-6329970 | Reverse length=483
E-Value1.2E-120
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 110.654191372868
Replicate 212.373050900498
Replicate 311.339790429781
Condition 2: 8 Hour
Replicate 118.047332008249
Replicate 218.932932717066
Replicate 318.79539265169
Condition 3: 24 Hour
Replicate 113.025749784087
Replicate 212.021008167184
Replicate 313.846561539971


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_92540.p1 GENE.S_Transcript_92540~~S_Transcript_92540.p1 ORF type:complete len:592 (+),score=111.66,PPR_2|PF13041.2|1.1e+02,PPR_2|PF13041.2|2.7,PPR_2|PF13041.2|8.7e-07,PPR_2|PF13041.2|3.1,PPR_2|PF13041.2|5.4e-06,PPR_2|PF13041.2|2.8e-07,PPR_2|PF13041.2|9.9e-12,PPR_2|PF13041.2|1.1e-15,PPR_2|PF13041.2|5.8e-16,PPR_2|PF13041.2|1.2e-10,PPR_2|PF13041.2|5.1e-07,PPR_2|PF13041.2|0.00028,PPR_2|PF13041.2|0.52,PPR_1|PF12854.3|3.8e+02,PPR_1|PF12854.3|5.7,PPR_1|PF12854.3|1.9e+03,PPR_1|PF12854.3|2.4,PPR_1|PF12854.3|1.3e+03,PPR_1|PF12854.3|0.47,PPR_1|PF12854.3|1.8e-06,PPR_1|PF12854.3|5.1e-06,PPR_1|PF12854.3|7.9e-13,PPR_1|PF12854.3|1.3e-07,PPR_1|PF12854.3|0.012,PPR_1|PF12854.3|0.0093,PPR_1|PF12854.3|51,PPR_1|PF12854.3|5.9e+03,PPR|PF01535.16|7.3e+03,PPR|PF01535.16|3.2,PPR|PF01535.16|0.11,PPR|PF01535.16|13,PPR|PF01535.16|20,PPR|PF01535.16|0.95,PPR|PF01535.16|8.7e-06,PPR|PF01535.16|0.00073,PPR|PF01535.16|2.3e-10,PPR|PF01535.16|0.0011,PPR|PF01535.16|0.31,PPR|PF01535.16|0.0023,PPR|PF01535.16|1.1,PPR_3|PF13812.2|6.3,PPR_3|PF13812.2|3.7,PPR_3|PF13812.2|1.2e+03,PPR_3|PF13812.2|13,PPR_3|PF13812.2|3e+03,PPR_3|PF13812.2|8.4e+02,PPR_3|PF13812.2|0.011,PPR_3|PF13812.2|8.9e-05,PPR_3|PF13812.2|0.078,PPR_3|PF13812.2|0.0016,PPR_3|PF13812.2|55,PPR_3|PF13812.2|53 S_Transcript_92540:1144-2919(+)
ATGGCAAAGCCCCTATCTTTCATCTTCACCCCTTTCTACAAAAACCCTAAACCCTCTTTCGTGTTTAAAGTTCGAAACTTTACGATGGGTATAGAGAATCAGGACCAACAACAGCTGAAAAAGATTGCTGCGGAAGTTGCTGAGATCATTAGAACCAGACCCAGATGGGAAAGCACACTCCTTTCGAACTTCCCATCACTCAATTTTATTGACCCCAATTTCTACAATGAGGTACTTAAACTTCAAGACAATGCCTTTCTTAATCTTCGTTTCTTCAATTGGCTTACTTCCCTATCTGGATTTTCCCCTGACCCCATTTCTTGCAATTCATTGTTTGTATCCCTTGTGAAATCTAAGGCTTCTGTTGTTGCAAAATCATTCCTTGATTCTGTTCCTCAGTTTAGCCCTGACCCAGATTGTTTAGAGTCTTTGATTTGTTGTTTATTTGAGGATGGTTATGTTGATGAAGCCCTTGATTTGATTGCAAAGTTGAAACCCTTAGGGGTTTTTTGCCCATCAATTATGACTTGGAATTCGGCTTTATGTGGGGCAGTTCGAGTTAAGAGGACTGATATTGTTTGGAAATTGTATGGGGAGATGATTGATAGTGGGGTTGGTGCTGATGTTGAGACTCTTGGACATTTGATTCAGGCATTTTGTGTTGAGAACAATGTAGAAAGAGGCTATGAACTTGTTCTTCAAGTTCGGGATGGTGGTGTTGCTCCTAGTAAGGTTGCCTTGAATAGATTGATATGTGAGCTCTCTAAGAGTGGGAACTATGGTAGGGTTTCGGAGCTTTTGCATTTTATGATTGCAAGGAATCAAAACCCAGATATTTATACTTATCAAGGGGTCATCTATGGGCTTTGCAAGAGAAGGAAAGAGGTTGAAGGGTATCGGATATTTAACGCCCTAAAGACTAGAGGGTATGTTCCTGATAGGGTGATGTACACAACTATGATTCATGGGCTTTGTCAGATGAGATGGCTTGGGGAAGCTAGGAAGTTGTGGTTTGAAGTGATGAGCAAGGGTATAATCCCGAATGAGTATACTTATAATGTGCTTATTCATGGGTATTTCACGATCCATGCTCTCGAAGAGGCTTGGAACTTGCATAGGGAGATGTGCAATCGAGGGTATAAGCTAACCACTGTGACTTACAATACCTTGATTGGTGGATTGTGCAAGAATAGGAAGGTGCATGAAGCTTACAGTTTGTTTGAAGAAATGGCCCAGAATGGGGTTGCTCGTGATGTGATCACATATAATACTCTTATTTTAGGTGTTTGTAAGCAAGGAGAATTAGCTAAGGGTATGATGCTCCTTGAAGAGCTTGTGGTTCAGGGTTTGCAGCCATCAACGTCATCTTATTCCCCTCTCATTGAACAGCTTTGTCAGGTTGGAAGCACGCAGCAAGCTTTGCAGTTGTGGACAAATATGGTTAATAAGGGTTTGGAACCTTCAATTTGCAGCCATGAGTGTATCATAACTGGCTTTTGCAAGGAAGGATTACCCATCGAAGGCATGCAGTGGTTGTCTGAAATGTTAGATAGGAAACTTGTTCCGCGGAAGGGAACTTTTGAGACGCTGATACAACGCCTTTCTCAGCAAGATAAGCTGGATGCTGCTCTTTTTGTTTTACAGTCTATGTTACGTATAGGTTATGTGTTCGGAGAAATTGTTTGTTCTTCCCTTGTTAGTAAACTTTGTAATGATAGTTTGGATGACATGGAGACAAGTCTCCAAGATGTCATATCCATCACACCAAGTTCTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_92540.p1 GENE.S_Transcript_92540~~S_Transcript_92540.p1 ORF type:complete len:592 (+),score=111.66,PPR_2|PF13041.2|1.1e+02,PPR_2|PF13041.2|2.7,PPR_2|PF13041.2|8.7e-07,PPR_2|PF13041.2|3.1,PPR_2|PF13041.2|5.4e-06,PPR_2|PF13041.2|2.8e-07,PPR_2|PF13041.2|9.9e-12,PPR_2|PF13041.2|1.1e-15,PPR_2|PF13041.2|5.8e-16,PPR_2|PF13041.2|1.2e-10,PPR_2|PF13041.2|5.1e-07,PPR_2|PF13041.2|0.00028,PPR_2|PF13041.2|0.52,PPR_1|PF12854.3|3.8e+02,PPR_1|PF12854.3|5.7,PPR_1|PF12854.3|1.9e+03,PPR_1|PF12854.3|2.4,PPR_1|PF12854.3|1.3e+03,PPR_1|PF12854.3|0.47,PPR_1|PF12854.3|1.8e-06,PPR_1|PF12854.3|5.1e-06,PPR_1|PF12854.3|7.9e-13,PPR_1|PF12854.3|1.3e-07,PPR_1|PF12854.3|0.012,PPR_1|PF12854.3|0.0093,PPR_1|PF12854.3|51,PPR_1|PF12854.3|5.9e+03,PPR|PF01535.16|7.3e+03,PPR|PF01535.16|3.2,PPR|PF01535.16|0.11,PPR|PF01535.16|13,PPR|PF01535.16|20,PPR|PF01535.16|0.95,PPR|PF01535.16|8.7e-06,PPR|PF01535.16|0.00073,PPR|PF01535.16|2.3e-10,PPR|PF01535.16|0.0011,PPR|PF01535.16|0.31,PPR|PF01535.16|0.0023,PPR|PF01535.16|1.1,PPR_3|PF13812.2|6.3,PPR_3|PF13812.2|3.7,PPR_3|PF13812.2|1.2e+03,PPR_3|PF13812.2|13,PPR_3|PF13812.2|3e+03,PPR_3|PF13812.2|8.4e+02,PPR_3|PF13812.2|0.011,PPR_3|PF13812.2|8.9e-05,PPR_3|PF13812.2|0.078,PPR_3|PF13812.2|0.0016,PPR_3|PF13812.2|55,PPR_3|PF13812.2|53 S_Transcript_92540:1144-2919(+)
MAKPLSFIFTPFYKNPKPSFVFKVRNFTMGIENQDQQQLKKIAAEVAEIIRTRPRWESTLLSNFPSLNFIDPNFYNEVLKLQDNAFLNLRFFNWLTSLSGFSPDPISCNSLFVSLVKSKASVVAKSFLDSVPQFSPDPDCLESLICCLFEDGYVDEALDLIAKLKPLGVFCPSIMTWNSALCGAVRVKRTDIVWKLYGEMIDSGVGADVETLGHLIQAFCVENNVERGYELVLQVRDGGVAPSKVALNRLICELSKSGNYGRVSELLHFMIARNQNPDIYTYQGVIYGLCKRRKEVEGYRIFNALKTRGYVPDRVMYTTMIHGLCQMRWLGEARKLWFEVMSKGIIPNEYTYNVLIHGYFTIHALEEAWNLHREMCNRGYKLTTVTYNTLIGGLCKNRKVHEAYSLFEEMAQNGVARDVITYNTLILGVCKQGELAKGMMLLEELVVQGLQPSTSSYSPLIEQLCQVGSTQQALQLWTNMVNKGLEPSICSHECIITGFCKEGLPIEGMQWLSEMLDRKLVPRKGTFETLIQRLSQQDKLDAALFVLQSMLRIGYVFGEIVCSSLVSKLCNDSLDDMETSLQDVISITPSS*

Click here to download the sequence:
Link to NCBI Protein BLAST