Transcript Information: S_Transcript_92574.p2


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value3E-23
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 19.6774549946111
Replicate 210.028540707961
Replicate 37.9838684344591
Condition 2: 8 Hour
Replicate 11.1078124840069
Replicate 21.3558696145289
Replicate 31.291869551817
Condition 3: 24 Hour
Replicate 116.927420540331
Replicate 213.048861210624
Replicate 313.648292427011


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_92574.p2 GENE.S_Transcript_92574~~S_Transcript_92574.p2 ORF type:complete len:231 (+),score=43.35,UBN2_3|PF14244.2|3.7e-34,Retrotrans_gag|PF03732.13|2.3e-08 S_Transcript_92574:1246-1938(+)
ATGACAGAAACACCTAAGACCATAGAACCCAGTGACCCTCTGTATCTTCATCCATCTGATGGACCAAACTCCCTCAAAGTCGATCCAATACTTACTGGACCTAACAACTTTAGACCCTGGAAAAGGCAGATGGAAATAGCTCTAGCCACTAAAAGAAAGCTTGGTTTTGTCACTAGTCTTATTGAAAGGCCAGCCACTGATAAGTTCAGGGAAGAAGCCTGGGAAACCTCTAACAGCATTGTTATTGCCTGGCTCTTAAATAATGTTAATGATAACATTAAGAAATCCATTATGTATATGGATACTGCAAGAAATATTTGGGTGAATCTGAGTATTAGGTTCACAGTGAGCAATGGCTCAAAAAAGTATAAACTGAACAAAGATACTTATGAGATTAGGCAGGATGGTAGGACAATCTCTGAGTACTATACAGAACTCAAAGGTGTGTGGGAAGAGCTAGAAGATATGAGTGACTATCCTGCTATAACCAATATTACCGAAGAGATAGCTGCTTTTGTAAGGGCTGTACGAAATGAGAAGGAAGAGCAGAGACTTTTCCAGTTTCTGAATGGATTGGACTCTAAATATGGACCTCTGAGGAGCAATATTCTTATCATGACTCCTTTACCTGAGGTGGAAGCAGCTATATCTATGATACAGCAGAGTCACAGGGTGATATGCTTGTTGATGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_92574.p2 GENE.S_Transcript_92574~~S_Transcript_92574.p2 ORF type:complete len:231 (+),score=43.35,UBN2_3|PF14244.2|3.7e-34,Retrotrans_gag|PF03732.13|2.3e-08 S_Transcript_92574:1246-1938(+)
MTETPKTIEPSDPLYLHPSDGPNSLKVDPILTGPNNFRPWKRQMEIALATKRKLGFVTSLIERPATDKFREEAWETSNSIVIAWLLNNVNDNIKKSIMYMDTARNIWVNLSIRFTVSNGSKKYKLNKDTYEIRQDGRTISEYYTELKGVWEELEDMSDYPAITNITEEIAAFVRAVRNEKEEQRLFQFLNGLDSKYGPLRSNILIMTPLPEVEAAISMIQQSHRVICLLM*

Click here to download the sequence:
Link to NCBI Protein BLAST