Transcript Information: S_Transcript_92918.p1


Annotated TAIR IDAT3G14120.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport; LOCATED IN: nuclear pore; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear pore protein 84/107 (InterPro:IPR007252); Has 5399 Blast hits to 5001 proteins in 612 species: Archae - 19; Bacteria - 730; Metazoa - 2186; Fungi - 823; Plants - 382; Viruses - 37; Other Eukaryotes - 1222 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:4677993-4685455 | Forward length=1101
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 110.891617172176
Replicate 212.767818030969
Replicate 310.502113603161
Condition 2: 8 Hour
Replicate 120.101154947075
Replicate 219.368220813097
Replicate 318.434260799123
Condition 3: 24 Hour
Replicate 111.30674988078
Replicate 210.891220563078
Replicate 310.906198830731


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_92918.p1 GENE.S_Transcript_92918~~S_Transcript_92918.p1 ORF type:complete len:1080 (+),score=226.70,Nup84_Nup100|PF04121.9|2.3e-64,Nup84_Nup100|PF04121.9|0.034 S_Transcript_92918:195-3434(+)
ATGGAGGTTGATATGGAGACTTCTCCTAGCTATTTCGATCCCCTAGACCTCAGTATCAGAGAGCAGTATCGTCGTTACGGGAAAAGGCAGTCAGGTTCTAGCATTTCACCACACCAACAAAGTCCATCTTCTAAATATGGTGAAGGAAGAAGATCCAACACTGCTTTGTTTTTGGAAGACATCAAACAAGAGGTTGAGAGCCTGGATTATCGAGAAGGAACACCGTCAAGGACACATTCTGCTTACAGACGAAGGTCCCCTGATAGTCGAGTCATATCGGAATTTGATGGAGCTGATTTATCTCGTCGGGGTGGAAGCTATTCGTTAAAAGCATGCAAGATTGAGGAGGATGAGTCGGATTCTGGGGAATCAATGTTTTCATTGTTTGCATCTCTTCTAGATTCTGCCCGTCAAGGCCTTATATCAGTTCCTGAACTAATCTTACAATTCGAGAAATCATGTCGTGATGTTTCAGAATCTATAAGATATGGTTCCAGTGAGAGGCATCGGATTGTAGAGGACAGATTGATGCGACAAAAAGCTCAGTTCTTGCTTGATGAAGCTGCTTCTTGGTCTCTTCTGTGGTATATCTATGGAAAAGGAAGTGAAGAAATACCTGAAGATCTTATTTTGGCGCCAACAACCTCACATTTGGAGGCTTGCCAATTTGTGACTACAAGCCTCGCAGCGCAATTGTGCCTCCGAATTGTTCAGTGGTTAGAAGGACTGGCGTCTAAAGCCCTGGAATTGGAGAGCAAGGTGCGTGGATCTCATGTTGGGACATACCTCCCCAGCTCTGGTATTTGGCATAATACCCAACGGCAACTTAAGAAGAATGATAAAAATCTGAAGACTGTTAAACATTTGGATTTTGATGCTCCTACTAGAGAAAATGCTCTGCCACTCCTAGACGATAGAAAACAAGATGAATCTCTCCTGGAAGATGTTTGGACTCTATTACGTGCTGGGAGACTGGAGGAAGCATGTGACCTATGCAGATCTGCAGGACAGCCATGGAGGGCAGCGAGTTTATGCCCTTTTGGAGGGATGGACCTAGTCCCATCTATTGAAGCCTTGTCGAAGAATGGAAAGAACAGAACAATGCAAGCCATTGAGCTAGAAAGTGGAGTTGGTCGACAATGGCGCCTTTGGAAATGGGCCTCTTATTCTGCATCAGAGAGGATTGCAGAGCAGGGTGGTGGAAAGTATGAAGCAGCAGTTTATGCAGCTCAATGTAGTAACTTAAAGCGCATGCTTCCTATCTGCACGGACTGGGAGTCAGCATGTTGGGCAATGGCCAAGTCATGGCTTGATGTCCAGATGGACTTCGCTTGTTTGCAACCTGGAAGAGCAGAGCTCTTGAAGAATTATGAAGAGACTATTGATGCAAGTCCTGGACAAAGAGTTAGCACAAATGGGTCTTCAGTAAGGCCGGAAAATTGGCCTCTGCAAGTTTTGAACCAGCAACCACGAAATCTTTCTTCTCTTCTTCAAAAACTTCACTCCTGTGACATGGTTCATGAAGCTGTTACTCGTGGATGCAAGGAGCAACATCGTCAGATTGAGATGAACCTGATGTCTGGAGATATACCACATTTATTGGACCTTGTATGGTCATGGATATCACCTTCAGATGAAGATCAAAATAAATTCAGGCCTCACGGAGATCCCCACATGATTCGTTTTGGAGCACATCTAGTTTTGGTGCTTAGATATTTGCTTGGAGATGAAGTGAAGGATGTCTTCAAGGAGAAGATAATGAATGGTGGTGATCTCATTCTCCATATCTATGCTATGTACCTGTTTACGCAACAACACGAAGAGCTGGTGGGAATTTATGCTTCACACCTTGCACATCATCGCTCTATTGACCTCTTTGTGCATATGATGGAGCTACGATTGAATGCTAGTGTACATGTTAAGTACAAACTGTTTCTATCTGCCATGGAGTACTTGCCATTTTCACCTGGAGATGAATCAAGAGGCAGCTTCGAGGAAATCATTGAGAGGGTTTTGACAAGGTCACGTGAACCCAAACATGGCAAGTATGATAACTCTGCAGATGTTGCAGAGCAGCATCGGTTGCAATCGCTTGATAAAGCTATGGTCATACAGTGGCTTTGCTTTACACCTCCTTCCACAGTCGACGAAGTTGAAGCTGTTAGTGCCAGGCTGCTTCTCCGAGCCCTTCTGCATAGTAATATTCTCTTCAGAGAATTTGCTGTGATATCCATGTGGAGGGTGCCAGCAATGCCAATAGGTGCCCACAAACTGCTTAGTTTCCTTGCAGAACCCCTGAAGCAACCCACAGAAAATCTTTTATCTTTTGAGGATCATGATGTTTCTGACTATCTGACGGAGTTCAGAGATTGGAGTGAATATTACTCCTGTGATGCTACATATCGCAACTGGCTTCAAATTGAATTGGATAATGCAGAAATTTCTTCCTCTGAGCTCTCCGTGGTAGAAAAACAACGAGCTATTTCAGCAGGAAAAGAGACACTCACTTCTTCACTGTTACTCCTACTGAGAAAGGAAAATCCTTGGTTGGTTCCGATTGAAGATAAAATCTATAACACAGCTGAAACTATGTTCCTTGAACTGCATGCCACAGCAATACTATGTTTGCCTTCTGGTGAATGCATGTCTCCAGATGCCACCTTATGTGCAACCTTGATGAGTGCCCTCTACTCTTCAGTGACAGAGGAAGTTGTATTAAATCGACAATTAACGGTGGATGTGAAGGTTCCCCCCAAGGATAATTTCTGTGTTGAGGTTACACTCCGTTGCTTGGCGGTGGAAGGTGATGGACTTGGGCCTCATGAACATAACGACGGTGGCATTCTTGCCAGTGTGATGGCAGCAGGCTTTAAAGGTGAATTTTCTCGATTTCAAGCTGGTGTAACCATGGAGATCTCGCGATTTGATGCTTGGTATTCTACTGCTGAAGGCTCATTTGAAGAGCCAGCGACATACATTGTGCGTGGTCTTTGTAGGAGGTGTTGCCTTCCTGAGCTAATTTTACGCTGCATGCAGGTGTCTGTCTCATTGCTGGAGTTGGGTGAAGTTTCGGAAAGGCATAATGAGTTGATTGAACTAGTTGCTTGTCCCGATACAGGATTTCTTCATTTATTTAGCCAACAGCAACTGCAGGAATTCTTGCTGTTTGAAAGGGAATACTCAATATGCTTGATGGAGCTTGAGGAGGAACGTTTTAGGACCTCTCAGGAGTTGTACTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_92918.p1 GENE.S_Transcript_92918~~S_Transcript_92918.p1 ORF type:complete len:1080 (+),score=226.70,Nup84_Nup100|PF04121.9|2.3e-64,Nup84_Nup100|PF04121.9|0.034 S_Transcript_92918:195-3434(+)
MEVDMETSPSYFDPLDLSIREQYRRYGKRQSGSSISPHQQSPSSKYGEGRRSNTALFLEDIKQEVESLDYREGTPSRTHSAYRRRSPDSRVISEFDGADLSRRGGSYSLKACKIEEDESDSGESMFSLFASLLDSARQGLISVPELILQFEKSCRDVSESIRYGSSERHRIVEDRLMRQKAQFLLDEAASWSLLWYIYGKGSEEIPEDLILAPTTSHLEACQFVTTSLAAQLCLRIVQWLEGLASKALELESKVRGSHVGTYLPSSGIWHNTQRQLKKNDKNLKTVKHLDFDAPTRENALPLLDDRKQDESLLEDVWTLLRAGRLEEACDLCRSAGQPWRAASLCPFGGMDLVPSIEALSKNGKNRTMQAIELESGVGRQWRLWKWASYSASERIAEQGGGKYEAAVYAAQCSNLKRMLPICTDWESACWAMAKSWLDVQMDFACLQPGRAELLKNYEETIDASPGQRVSTNGSSVRPENWPLQVLNQQPRNLSSLLQKLHSCDMVHEAVTRGCKEQHRQIEMNLMSGDIPHLLDLVWSWISPSDEDQNKFRPHGDPHMIRFGAHLVLVLRYLLGDEVKDVFKEKIMNGGDLILHIYAMYLFTQQHEELVGIYASHLAHHRSIDLFVHMMELRLNASVHVKYKLFLSAMEYLPFSPGDESRGSFEEIIERVLTRSREPKHGKYDNSADVAEQHRLQSLDKAMVIQWLCFTPPSTVDEVEAVSARLLLRALLHSNILFREFAVISMWRVPAMPIGAHKLLSFLAEPLKQPTENLLSFEDHDVSDYLTEFRDWSEYYSCDATYRNWLQIELDNAEISSSELSVVEKQRAISAGKETLTSSLLLLLRKENPWLVPIEDKIYNTAETMFLELHATAILCLPSGECMSPDATLCATLMSALYSSVTEEVVLNRQLTVDVKVPPKDNFCVEVTLRCLAVEGDGLGPHEHNDGGILASVMAAGFKGEFSRFQAGVTMEISRFDAWYSTAEGSFEEPATYIVRGLCRRCCLPELILRCMQVSVSLLELGEVSERHNELIELVACPDTGFLHLFSQQQLQEFLLFEREYSICLMELEEERFRTSQELY*

Click here to download the sequence:
Link to NCBI Protein BLAST