Transcript Information: S_Transcript_92986.p1


Annotated TAIR IDAT5G35695.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:13869120-13869941 | Forward length=211
E-Value2E-20
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.9406631199094
Replicate 20.60946932479323
Replicate 31.0189356952266
Condition 2: 8 Hour
Replicate 11.6494777040876
Replicate 22.1012233529025
Replicate 32.0020409352745
Condition 3: 24 Hour
Replicate 10.3620698921093
Replicate 21.0017154287888
Replicate 30.13934831163048


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_92986.p1 GENE.S_Transcript_92986~~S_Transcript_92986.p1 ORF type:5prime_partial len:181 (-),score=24.28,DDE_Tnp_4|PF13359.2|9.4e-18,Plant_tran|PF04827.10|6.4e-08 S_Transcript_92986:103-645(-)
CGTGTCTTTGCTGACGCCATATTTAGAAGTGAAAACAAATTTCCTGTTCCTACAAGGGATTATTTCTATGTGGTTGATAGTGGTTACCCTAATGTAAAAGGGTTTTTAGCTCCTTATCGTGGTGAGCGATATCATCGTAGTGACTTTCTACGTGGTGGAGGCATGAGAGGAAAAGAAGAATTGTTCAATTATACACATTCTTCGGTTCGTAATGTCATAGAGCGAGCATTTGGTGTACTCAAAGCAAGATTTCATATTTTAAAAGATATACCGAACTATCCCTTGAGGCGTCAAATGTTGATTCCACATGCTTGTTGTGCATTGCATAATTTTATTAGGATGGAAGATAGGCTTGATAATTTATTTACAGTTTATGGCCAAGAATATTCAGAAGTTCCAAGTGAAAGATCTAATGTGGTCCAAGAAGGTTTTCCTATCGATATGACAAACAATGATGAAATGGTTCAAGTTAGGGAATCAATTGCTGTGGAAAAACTACAATGGTCGTCGTCGTCGCCAAAGATAATTTTAGCAGCATTGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_92986.p1 GENE.S_Transcript_92986~~S_Transcript_92986.p1 ORF type:5prime_partial len:181 (-),score=24.28,DDE_Tnp_4|PF13359.2|9.4e-18,Plant_tran|PF04827.10|6.4e-08 S_Transcript_92986:103-645(-)
RVFADAIFRSENKFPVPTRDYFYVVDSGYPNVKGFLAPYRGERYHRSDFLRGGGMRGKEELFNYTHSSVRNVIERAFGVLKARFHILKDIPNYPLRRQMLIPHACCALHNFIRMEDRLDNLFTVYGQEYSEVPSERSNVVQEGFPIDMTNNDEMVQVRESIAVEKLQWSSSSPKIILAAL*

Click here to download the sequence:
Link to NCBI Protein BLAST