Transcript Information: S_Transcript_93393.p1


Annotated TAIR IDAT1G45474.1
Annotated Gene Namephotosystem I light harvesting complex gene 5
Annotated Gene Symbol(s)LHCA5
Annotation TypeOrtholog
Chromosome Positionchr1:17179353-17180439 | Forward length=256
E-Value7.7E-129
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 1154.84824052025
Replicate 2153.13210233623
Replicate 3193.44380958799
Condition 2: 8 Hour
Replicate 1203.69696899217
Replicate 2189.00069165636
Replicate 3209.29004444743
Condition 3: 24 Hour
Replicate 1164.96932384193
Replicate 2171.99314785161
Replicate 3163.7564586747


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_93393.p1 GENE.S_Transcript_93393~~S_Transcript_93393.p1 ORF type:complete len:270 (+),score=46.35,Chloroa_b-bind|PF00504.17|2.7e-47 S_Transcript_93393:981-1790(+)
ATGGCATCAACTACTATAGTGGGGAAAGTTTCTCTTGTACCTGAGCTACCTTGTACCTCTACTCGTTCATCCTTCCTCACGAACACCAACTTTCATACATCATCATCATCTTCTTCTTCTTCTTGTTTTTCACGGGCTAAGGCATTTGGTTCAACGCGATTAGTTGCGCTTCATGCTCAAGCTCGCCCTACTTGGCTTCCTGGTCTCGACCCTCCACCACACCTTGATGGAAGTTTGGCTGGGGATTTTGGATTTGACCCTCTTGGACTCGGGGAGGATCCGGAGAGCTTAAGATGGTATGTCCAAGCAGAGCTGGTTCACGCCCGCTTTGCTATGGCAGGAGTTGCTGGCATTCTTTTCACTGACTTACTACGTACGACCGGAATTAGAGATTTACCAGTTTGGTATGAAGCAGGAGCAACAAAATTCAACTTTGCTAGCACAACAACCCTGTTGATCATCCAATTAATCTTAATGGGATTTGTGGAAATTAAAAGGTTCATGGATTTCAAAAGTCCTGGATCACAAGCTAAGGATGGTTCCTTCTTTGGTCTTGAAGCTGCATTCGAAGGCCTCGAACCAGGGTATCCTGGAGGTCCATTGCTAAATCCCCTTGGCCTAGCCAAAGATATCAATAACGCCCATGATTTGAAGCTCAAGGAAATTAAGAATGGAAGGCTAGCAATGGTAGCAGTGCTTGGCATATTTGTGCAAGCTTCTGTGACTCATGCTGGCCCCATTGAGAACCTTCTGGAGCACCTTTCTGATCCATGGCACAAGACGATAATTCAGATGATGTCTACCAATTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_93393.p1 GENE.S_Transcript_93393~~S_Transcript_93393.p1 ORF type:complete len:270 (+),score=46.35,Chloroa_b-bind|PF00504.17|2.7e-47 S_Transcript_93393:981-1790(+)
MASTTIVGKVSLVPELPCTSTRSSFLTNTNFHTSSSSSSSSCFSRAKAFGSTRLVALHAQARPTWLPGLDPPPHLDGSLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRTTGIRDLPVWYEAGATKFNFASTTTLLIIQLILMGFVEIKRFMDFKSPGSQAKDGSFFGLEAAFEGLEPGYPGGPLLNPLGLAKDINNAHDLKLKEIKNGRLAMVAVLGIFVQASVTHAGPIENLLEHLSDPWHKTIIQMMSTN*

Click here to download the sequence:
Link to NCBI Protein BLAST