Transcript Information: S_Transcript_93980.p1


Annotated TAIR IDAT1G66345.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:24737719-24739353 | Forward length=544
E-Value3E-159
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.6489734778034
Replicate 27.4329184070772
Replicate 36.4434514659282
Condition 2: 8 Hour
Replicate 17.7927005615192
Replicate 27.0983762172395
Replicate 37.5232403311699
Condition 3: 24 Hour
Replicate 16.8532967813629
Replicate 26.8678216898022
Replicate 36.8787393832135


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_93980.p1 GENE.S_Transcript_93980~~S_Transcript_93980.p1 ORF type:complete len:561 (+),score=64.84,PPR_2|PF13041.2|1.3e+03,PPR_2|PF13041.2|1.1,PPR_2|PF13041.2|2.3e-05,PPR_2|PF13041.2|0.69,PPR_2|PF13041.2|2.9e-07,PPR_2|PF13041.2|4.6e-11,PPR_2|PF13041.2|1.8e-06,PPR_2|PF13041.2|1.6e-05,PPR_2|PF13041.2|4.3e-10,PPR_2|PF13041.2|1.4e-08,PPR_2|PF13041.2|0.0064,PPR|PF01535.16|3.9e+02,PPR|PF01535.16|38,PPR|PF01535.16|0.18,PPR|PF01535.16|4.4e+02,PPR|PF01535.16|0.007,PPR|PF01535.16|1.1e-05,PPR|PF01535.16|8e-06,PPR|PF01535.16|2.8e+02,PPR|PF01535.16|9.6e-05,PPR|PF01535.16|5e-05,PPR|PF01535.16|0.012,PPR_1|PF12854.3|4.7e+02,PPR_1|PF12854.3|16,PPR_1|PF12854.3|0.011,PPR_1|PF12854.3|1,PPR_1|PF12854.3|2.1e-05,PPR_1|PF12854.3|0.0017,PPR_1|PF12854.3|4.6,PPR_1|PF12854.3|0.00081,PPR_1|PF12854.3|0.00013,PPR_1|PF12854.3|5.7,PPR_3|PF13812.2|6.1e+03,PPR_3|PF13812.2|5.5e+02,PPR_3|PF13812.2|12,PPR_3|PF13812.2|22,PPR_3|PF13812.2|0.03,PPR_3|PF13812.2|0.041,PPR_3|PF13812.2|0.0021,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|0.87,PPR_3|PF13812.2|0.14,PPR_3|PF13812.2|0.0075 S_Transcript_93980:240-1922(+)
ATGAGTACACCTCTTTTACTGAAGCTCTCTCTTTCAATTGGCAAAACCACCAGACTGAATTGCGTCTTTAGTCATCAGTTAGCTGGTCCCGACCCTTCTCATGCCATTGTAGAAACACTTTGTGAGTCTTTCAGGAAAGGCTTGAATTGGGATGCTCTGAGCAGAAAATTTGATTATGCGGATTTGAGTGACTGTATTATCGAGAAAGTACTTCTAGAGTTTAAGGAACCCAATGAGGCGAAAAGAGCACTAAGTTTTTTCCATTGGGTTGCACATAACAAGAAGGTTGATCGTGGACTTGAGCCGTATTGTATCACCATTCATATTTTGGCCCGTGCACGTCTCATAAACGATGCCTGTGGTCTGCTAGAGTCTGTCTTGATGAAGAATAAGGAGAATAGTGTTGATGACTCTTTGAGGTTTTCTGTTGTTGATATGCTGTTGAGTACGTACAGGATTACGAACGCTAGCCCTTTTGTTTTTGACTTGTTGGTGCGAACTTATAGTAAGCTAAGATTGTTCGAAACTGCTTTTGATGTCATCTGTTACTTAGATGAACATGGATTCTGTTTGAACATTAGGACTTTCAACACTTTACTTTATAGCATACAAAAATCAGCAGGCACAGATGGCTTGATTTGGAAGGTATATGGGCATATGATTCAGAAGAGAATATACCCAAACGATCTGACAGTTAGAATTATGATCAACGCATTGTGTAAGGCTGGTGAGCTTCAACGCTTTGTAGACATTATTGATAGGATTCATGGAAAAAGATGCTCCCCTGTGATAGTTGTGAATACCAGTCTCATTTTTAAAATGTTAGGGGAGGGGAAAATTAAGGAAGGGTTAGTTCTATTGAATAGGTTGTTGCAAAAGAACTTAATCCTTGATACTATTTCTTACTCGATGGTTGTTTATGTGAAAGTCAAAAGTGGGGAATTGGACTCTGCAAGAGAAGTGTATGAAGAAATGCTGACCAGGGGTTTTAGTCCTAACTCTTTTGTGTACACCCTGTTTATTACAGCCTATATTAGGGAGGGGATGGTAGTTGAGGCCCTTGAATTGATGGAAGAAATGGTGAGTGTTGGTCTAAAACCATATGATGAGACTTACAATTCTCTCATACTTGGCTGTGCAAAAACAGGTAATGTGGTAAATAGTGTCAGACTTTGTGAGGAAATGGTAGAAAAAGGTTTGATTCCAAGCTCTTCAGCTTTTAATGAAATTGTCGAAAAGCTATGTGAAGGTGGGAATATGGAGCAGGCCAATGAGATGTTAACTGGTATAATGGGGAAAGGGTTTTTGCCCAATGAGACAACTTATTGTTTTTTAATTGATGGCTATAGTAGAGAGAGGAATATTGCAGAGGTTCTCAAATTGTACTACGAAATGGAATCTAGATCACTATCTCCTGGAGTTTCAAGTTTTACTTCACTGATCACAACACTTTGTGAGCATAAGAAATTAGAAGAAGCAGAGAAGTACTTTGCCAAAATGAAATCTCGAACATTGTGCCCAAACATATACATATATAAATCATTGATAGTTGCTCACGTTGAAAATGGAAACGAAGGAAGGGCTCATCAACTTTATAGCGAGATGCTTCAAAAGGGTTTGAAGATCATCATCAATAATAAATCGATCTCTTATAGTCTTTCTTTTGAAGATCACAAGATGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_93980.p1 GENE.S_Transcript_93980~~S_Transcript_93980.p1 ORF type:complete len:561 (+),score=64.84,PPR_2|PF13041.2|1.3e+03,PPR_2|PF13041.2|1.1,PPR_2|PF13041.2|2.3e-05,PPR_2|PF13041.2|0.69,PPR_2|PF13041.2|2.9e-07,PPR_2|PF13041.2|4.6e-11,PPR_2|PF13041.2|1.8e-06,PPR_2|PF13041.2|1.6e-05,PPR_2|PF13041.2|4.3e-10,PPR_2|PF13041.2|1.4e-08,PPR_2|PF13041.2|0.0064,PPR|PF01535.16|3.9e+02,PPR|PF01535.16|38,PPR|PF01535.16|0.18,PPR|PF01535.16|4.4e+02,PPR|PF01535.16|0.007,PPR|PF01535.16|1.1e-05,PPR|PF01535.16|8e-06,PPR|PF01535.16|2.8e+02,PPR|PF01535.16|9.6e-05,PPR|PF01535.16|5e-05,PPR|PF01535.16|0.012,PPR_1|PF12854.3|4.7e+02,PPR_1|PF12854.3|16,PPR_1|PF12854.3|0.011,PPR_1|PF12854.3|1,PPR_1|PF12854.3|2.1e-05,PPR_1|PF12854.3|0.0017,PPR_1|PF12854.3|4.6,PPR_1|PF12854.3|0.00081,PPR_1|PF12854.3|0.00013,PPR_1|PF12854.3|5.7,PPR_3|PF13812.2|6.1e+03,PPR_3|PF13812.2|5.5e+02,PPR_3|PF13812.2|12,PPR_3|PF13812.2|22,PPR_3|PF13812.2|0.03,PPR_3|PF13812.2|0.041,PPR_3|PF13812.2|0.0021,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|0.87,PPR_3|PF13812.2|0.14,PPR_3|PF13812.2|0.0075 S_Transcript_93980:240-1922(+)
MSTPLLLKLSLSIGKTTRLNCVFSHQLAGPDPSHAIVETLCESFRKGLNWDALSRKFDYADLSDCIIEKVLLEFKEPNEAKRALSFFHWVAHNKKVDRGLEPYCITIHILARARLINDACGLLESVLMKNKENSVDDSLRFSVVDMLLSTYRITNASPFVFDLLVRTYSKLRLFETAFDVICYLDEHGFCLNIRTFNTLLYSIQKSAGTDGLIWKVYGHMIQKRIYPNDLTVRIMINALCKAGELQRFVDIIDRIHGKRCSPVIVVNTSLIFKMLGEGKIKEGLVLLNRLLQKNLILDTISYSMVVYVKVKSGELDSAREVYEEMLTRGFSPNSFVYTLFITAYIREGMVVEALELMEEMVSVGLKPYDETYNSLILGCAKTGNVVNSVRLCEEMVEKGLIPSSSAFNEIVEKLCEGGNMEQANEMLTGIMGKGFLPNETTYCFLIDGYSRERNIAEVLKLYYEMESRSLSPGVSSFTSLITTLCEHKKLEEAEKYFAKMKSRTLCPNIYIYKSLIVAHVENGNEGRAHQLYSEMLQKGLKIIINNKSISYSLSFEDHKM*

Click here to download the sequence:
Link to NCBI Protein BLAST