Transcript Information: S_Transcript_94047.p1


Annotated TAIR IDAT5G22010.1
Annotated Gene Namereplication factor C1
Annotated Gene Symbol(s)AtRFC1, RFC1
Annotation TypeOrtholog
Chromosome Positionchr5:7280632-7287037 | Reverse length=956
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 114.338433318546
Replicate 214.858613375469
Replicate 314.867103577596
Condition 2: 8 Hour
Replicate 118.039539360105
Replicate 217.121312734485
Replicate 317.987965274816
Condition 3: 24 Hour
Replicate 113.909395202174
Replicate 213.9683083593
Replicate 313.923597982824


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_94047.p1 GENE.S_Transcript_94047~~S_Transcript_94047.p1 ORF type:complete len:980 (+),score=278.54,RFC1|PF08519.8|5.6e-44,BRCT|PF00533.22|6.4e-17,BRCT|PF00533.22|1.6e+04,AAA|PF00004.25|4.4e-10,Rad17|PF03215.11|3.4e-05,Rad17|PF03215.11|0.95,PTCB-BRCT|PF12738.3|2.6e-06 S_Transcript_94047:208-3147(+)
ATGTCAGATATTAGGAAGTGGTTTATGAAGAAACATGACAAGGAAAATGGCAATGCAGCCAAGCCAGGAGGAGCGAAGCCAGCATCTGGAAAGCCTTCCACTGCTGCTTCCCCACAACCTGAGAAGCCTAAAGGCGAAGAAAGTGCTGCTAGAAGGAAAACGAGCAAATACTTTGACAAAGATCCAGAGAAGTCAAAAGCTGAGAGTGAGAAAGGGGAGATTTCAGCCAAACGAAAGACTGAAAAGGGCAGTCGGGATGCCAATGATAATATCAAACCACCGCCTGCCAAGAAGGTTCACATAGTTGAGGATGAAGATGACGACGATGATTATGCTCCAATTAGTGCCAGGAAGAAGACAGATGAGACTACTCCTACCAAAAAATTAAAGAGTGGTTCTGGTAGGGGTATTGCACAGAAAAATGTGGATGTTGATTTGAGTGATGATGAAATGGATGCTGAGAAGGAGACTGATACTCCAGCTAAATCTTGTGGAAGGGGTCATGGAGGGAGGGCCTCCTCGACACCTGCTGCTGGTGGACGAGGAAGAGGAGCTGGTAGACGAGGTGGGTTCATGAACTTTGGTGAGAGGAAAGATCCACCCCATAAAGGCGAAAAGGAAGTTCCGGAAGGCGCTCCTGATTGTTTAAATGGCTTGACTTTCGTGATTTCTGGAACACTAGACAGTTTGGAAAGGGAAGAAGCTGAAGATTTGATCAAACGGCATGGTGGTCGTGTTACTGGATCAGTCAGCAAGAAAACGAATTATCTTTTATGTGATGAGGATATTGGGGGACGGAAATCTGAAAAAGCCAAAGAACTGGGAACACGTTTTCTGACAGAGGATGGATTGTTTGATATGATTTATGCATCCAAAAATTCAATGAAAGCATCTACTGGAGACAATTCAAAAAAACCTTCTGATAGCAATGCCGCATCTACTGTGAGGAGAATTCAACAAAATGTGGAAACAAAAAAAGGTGACGGAGGCAAATCTTCTGCCAAAACTAAAGCTCCTGTATCATCTTTAGGTGCCTCTCCTGCTAAAAAAAAGCCTCTTTCAAAGGAAGGTGCTACTGTGACGTGGACAGAGAAATATAGGCCTAAAGTTCCCAATGAAATAGTTGGCAATCAGGCACTTGTTAAGCGTCTTCATGATTGGTTGTCACATTGGGATGAACATTTTTTACACAATCAAGGAAAGGGGAAAAAGCAGAACAATTCTGGTGACAAAAAAGCTGTCTTAATGAGTGGAAATCCCGGCATAGGGAAAACTACGTCAGCAAAGCTAGTTAGTAAAATGTTAGGTTACGAGACAATTGAGGTCAATGCTAGTGACAACCGTGGGAAGGCTGATTCTAAAATTGGGAAAGGAATAGGTGGAAGTACTGCGAATTCGATAAAGGAGCTTATTAGTAATGAGTCCCTTGGTGGCATGGATAGGTCAAAGCATCTCAAGACTGTTCTTATTATGGATGAGGTTGATGGCATGTCTGCGGGTGATAGAGGTGGGGTTGCTGATCTGATTTCTAGCATCAAGATCTCCAAAATCCCCATCATTTGCATTTGTAATGACCGCTACAGCCAGAAGTTGAAAAGTCTTACAAACTACTGTGAACAACTTACTTTCCGGAAGCCCACAAAACAGCAGATGGGAAAGAGATTGTTGCAAATTGCAAATGCAGAAGGGCTTCAAGTGAATGAGATTGCTTTAGAAGAGCTTGCAGAACGTTGTAATGGTGATATGCGCATGGCAGTGAACCAGCTCCAGTATATGAGCTTGTCCATGTCAGTTATCAAATATGATGATATTAGACAACGTCTTCTTAGCAGTGCTAAGGATGAAGATATTTCTCCATTTACAGCTGTTGACAAGTTGTTTGGTTTTAATGGTGGGAAGTTGAGGATGGATGAAAGAATTGACCTCAGCATGAGCGATCTTGATCTGGTTCCTCTTCTTATCCAGGAAAATTATCTTAACTATCGACCAAGCTCTATGGGGAAAGATGACAGCGGGATAAAAAGGATGCGCTTGCTTGCACGTACAGCTGAATCAATTGCCGATGGAGATATTATTAATGTACAAATCAGAAGATATCGGCAGTGGCAACTCTCTCAAAGTAGCTGTGTTTCTTCCTGCATAGTACCTGCCTCATTGATGCATGGACAGAGGGAGACTCTTATGCCGGGTGAAAGAAACTACAACAGATTTGGTGGATGGCTTGGGAAGAACTCAACATTTGGAAAAAATATGAGAATCTTGGAGGATCTTCATGTTCACGTTCTTGCATCTAGTGAATCCTATTTGGGGAGGGGAACTTTACGACTTGATTACCTTACCCTTCTTTCTAAACAATTAACTGAACCACTTCGAGTTCTTCCCAAGGATGAAGCTGTAAAAAAGGTGGTTGAATTTATGGATGCTTACTCGTTGAGCATGGAAGACTATGAGACGCTTATGGAGTTATCGAAATTTCAGGGGCGCCCTAGTCCAACAGAAGGAATTCTGCCAGCAGTTAAATCTGCATTGACAAAGGCATATAAAGAAGGTAGTAGTTCTCGTGTGGTACGAACAGCAGACATGATCACTCTTCCTGGAATTAAGAAGGCTCCGAAGAAGAGAATTGCTGCTATTTTGGAACCTGTTGATGAAGTAAATGAGGCAGAGCGTGATATTGCCGCTGAAAGCGAGGAAGAGAACCCTGAAGATGCAGAGGATTTGGAGGATACTGGCAATGGTGAGCAAAAGCCAAAGTTGGATTTTGAGAGCAATGATGCAAAAGGAATTCAAGTACAATTGGACCTCAAAGGTGCTGGAAATTCTGGCACCAAGAAAACCCAAAGGGCTCCGGCAGGAAGAGGCAAAGGGGGTTCTTCTGAGCCAGGCTCGGGAAAGAAAGGTGGTCGTGGATCAGGATCTGCAGCCAAGAGGAAGAGATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_94047.p1 GENE.S_Transcript_94047~~S_Transcript_94047.p1 ORF type:complete len:980 (+),score=278.54,RFC1|PF08519.8|5.6e-44,BRCT|PF00533.22|6.4e-17,BRCT|PF00533.22|1.6e+04,AAA|PF00004.25|4.4e-10,Rad17|PF03215.11|3.4e-05,Rad17|PF03215.11|0.95,PTCB-BRCT|PF12738.3|2.6e-06 S_Transcript_94047:208-3147(+)
MSDIRKWFMKKHDKENGNAAKPGGAKPASGKPSTAASPQPEKPKGEESAARRKTSKYFDKDPEKSKAESEKGEISAKRKTEKGSRDANDNIKPPPAKKVHIVEDEDDDDDYAPISARKKTDETTPTKKLKSGSGRGIAQKNVDVDLSDDEMDAEKETDTPAKSCGRGHGGRASSTPAAGGRGRGAGRRGGFMNFGERKDPPHKGEKEVPEGAPDCLNGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIGGRKSEKAKELGTRFLTEDGLFDMIYASKNSMKASTGDNSKKPSDSNAASTVRRIQQNVETKKGDGGKSSAKTKAPVSSLGASPAKKKPLSKEGATVTWTEKYRPKVPNEIVGNQALVKRLHDWLSHWDEHFLHNQGKGKKQNNSGDKKAVLMSGNPGIGKTTSAKLVSKMLGYETIEVNASDNRGKADSKIGKGIGGSTANSIKELISNESLGGMDRSKHLKTVLIMDEVDGMSAGDRGGVADLISSIKISKIPIICICNDRYSQKLKSLTNYCEQLTFRKPTKQQMGKRLLQIANAEGLQVNEIALEELAERCNGDMRMAVNQLQYMSLSMSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDLDLVPLLIQENYLNYRPSSMGKDDSGIKRMRLLARTAESIADGDIINVQIRRYRQWQLSQSSCVSSCIVPASLMHGQRETLMPGERNYNRFGGWLGKNSTFGKNMRILEDLHVHVLASSESYLGRGTLRLDYLTLLSKQLTEPLRVLPKDEAVKKVVEFMDAYSLSMEDYETLMELSKFQGRPSPTEGILPAVKSALTKAYKEGSSSRVVRTADMITLPGIKKAPKKRIAAILEPVDEVNEAERDIAAESEEENPEDAEDLEDTGNGEQKPKLDFESNDAKGIQVQLDLKGAGNSGTKKTQRAPAGRGKGGSSEPGSGKKGGRGSGSAAKRKR*

Click here to download the sequence:
Link to NCBI Protein BLAST