Transcript Information: S_Transcript_94164.p1


Annotated TAIR IDAT3G55220.1
Annotated Gene NameCleavage and polyadenylation specificity factor (CPSF) A subunit protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:20467116-20470944 | Reverse length=1214
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 123.399276539851
Replicate 225.249443455719
Replicate 325.007593205703
Condition 2: 8 Hour
Replicate 135.160805345297
Replicate 236.780237345344
Replicate 337.079816986092
Condition 3: 24 Hour
Replicate 123.448335869935
Replicate 222.073514984382
Replicate 323.589678468873


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_94164.p1 GENE.S_Transcript_94164~~S_Transcript_94164.p1 ORF type:5prime_partial len:1267 (+),score=304.25,MMS1_N|PF10433.5|1.5e-167,MMS1_N|PF10433.5|8.6e+02,CPSF_A|PF03178.11|66,CPSF_A|PF03178.11|1.4e+03,CPSF_A|PF03178.11|5.7e-99 S_Transcript_94164:2-3802(+)
CGGCTCAGCGCTTACTCAAATCTGAGTATTACTCCGGTACTCCCTAATTCCCCACTCTCTTTCTTTCTTTCTTTCGTCCCTCCCTCCCTCCTTTCTCCAAGGAGAGACCTTAAACCCTACTCTGGAACTCTAGGGTTTCTCTCTCTATTCTGTGAAATCAAATCAAAAACCATGTATCTATACAGCTTAACTCTCCAAAAACCCACCGGCATAGTATGCGCTATCAATGGCAACTTCTCCGGTGGTAAGATCCAAGAAATCGTAGTGGCTCGTGGCAAAATCCTCGACCTTCTTCGTCCTGACGATAATGGTAAGATTCAAACCCTCCTTTCTGTCGATGTTTTCGGTGCTATTCGTTCTTTAGCCCAATTTCGCTTAACTGGTTCCCAAAAAGATTACATTGTTGTTGGTTCCGATTCCGGTCGTATTGTTATTTTAGAGTACAATAAAGAGAAGAATGTTTTTGATAAGGTTCATCAAGAAACCTTTGGTAAATCCGGTTGTCGTCGTATTGTTCCTGGTCAGTATTTGGCTATTGACCCTAAAGGTAGGGCTGTTATGATTGGTGCTTGTGAAAAACAGAAACTTGTTTATGTTTTGAATCGTGATACTGCTGCTAGGCTTACCATTTCGTCTCCCTTAGAGGCTCATAAGACTCATACTATTACGTACTCAATTAGCGGGGTTGATTGTGGGTTTGATAACCCTATTTTTGCTGCCATTGAGATGGATTATTCTGAGGCTGACCAGGATTCTACTGGCCAAGCTGCTGCCGAGGCTCAGAAACACCTTACCTTTTACGAGCTCGATTTGGGTCTTAACCATGTTTCGCGGAAGTGGTCTGAGCCTGTTGATAATGGGGCTAATATGCTTGTTACTGTGCCCGGTGGTGGGGATGGGCCCAGTGGGGTTTTGGTTTGTGCTGAGAATTTTGTCATTTATAAGAATCAAGGGCACCCCGATGTTAGGGCTTTGATTCCTAGGAGAGCGGATTTGCCTGCTGAACGTGGGGTTCTTATTGTTTCTGCTGCTACACACAAGCAGAAGTCAATGTTCTTCTTTCTGTTGCAGACTGAGTATGGTGACATATTTAAGGTCACTTTGGAGCATGGGAGTGAGGGTGTCACTGAGCTGAAGATTAAGTACTTTGATACCATCCCTGTGTCATCTTCCATGTGTGTGTTGAAGTCGGGGTTTTTGTTTGCTGCTTCTGAGTTTGGTAATCATGCCTTGTATCAGTTTCAAGCCATAGGTGATGAACCTGATGTGGAGTCTTCATCAGCTAGGATGATGGAATTGGAAACTGAAGAAGGTTTCCAGCCCGTGTTTTTCCAACCTAGGAGGCTTAAGAATCTTCTCAGGGTTGACCAAGTGCAGAGCCTGATGCCGATAATGGACATGAAGGTCATTAATCTTTTTGAGGAAGAAACTCCGCAGATATTCTCCCTGTGTGGCCAAGGTCCTCGCTCATCTTTAAGGATTCTAAGGCCTGGTTTGGGAATTACTGAGATGGCTACCTCTCCTCTTCCAGGTGTGCCTAATGCTGTATGGACTGTGAAGAAAAATGTCAATGATGAATTTGATGCCTATATTGTGGTCTCTTTTGCTAGTGTTACTCTTGTACTCTCCATTGGTGAGACTGTTGAAGAAGTTAGCGACAGTGGGTTCTTGGATACTACCCCTTCTCTAGCTGTATCTTTGATTGGCGACGACTCTCTCATGCAAGTCCATCCTAGTGGTATTAGGCACATTAGGGAAGATGGACGTATCAATGAGTGGCGAACTCCAGGAAAGAGAACAATTGTGAAGGTTGGTTACAACAGGCTTCAAGTTGTCATTGCACTGAGTGGAGGAGAGCTAATTTACTTTGAGGTGGATATGACTGGTCAGTTGATGGAAGTGGAGAAACATGAAATGCCTGGAGATGTGGCATGTTTAGACATTGCCCCAGTTCCAGAAGGGAGACAGAGATCCCGATTCCTTGCAGTTGGGTCATATGATAACACTATACGCATCTTATCTTTGGATCCTGATGACTGTATGCAGGTCTTGAGTTTGCAAAGTGTTTTCTCACCCCCTGAATCCCTCCTCTTTCTTGAGATACAGGCATCAACGGGGGGAGAAGATGGTGCTGATCACCCTGCCAGTCTTTTTCTGAATGCTGGTCTGCAGAACGGTGTTCTGTTTAGGACAGTAGTTGACATGGTAACAGGCCAACTTTCTGATTCCCGCTCTCGGTTTTTAGGTCTCAGAGCCCCTAAACTTTTCTCAATTATTGTGAGAGGTCGGCGTGCAATGCTTTGCTTGTCAAGTCGGCCATGGCTTGGCTACATATATCAAGGACATTTTCTGTTGACCCCTCTTACTTGTGGTACTCTTGAGTTTGCTGCTTCGTTTTCCTCTGATCAGTGTGCTGAAGGTGTTGTTGCTGTTGCTGCTGAGGCACTTAAAGTTTTCACTATTGAAAGGCTTGGTGAAACATTCAATGAAACTGTAATACCATTGAGGTATACCCCAAGGAAATTTGTCCTTCAGCCCAAGCGAAAACTGCTAGTGATGATTGAGAGTGACCAGCGGGCGTTGACGGCTGAAGAGCGAGAAGCTTCACAGAAGGAGTGCTTTGCATCTGGAGTGGATGAGAATGGTAATGTTGAAATGGAAAATGGTGATGATGATGAAGAGAATCAGCTCTCCGATGAGCAGTATGGTTATCCAAAAGCAGAGAAAGAGAAATGGGTTTCTTGCATCAGAGTTCTTGATCCGAGAACAGAGGAGACAGTTTGTTGCCTAGAACTTCAGGATAATGAGGCTGCATTCAGCCTATGTACTGTGAATTTTCATGACAAGGAGCATGGGATTCTATTAGCTGTCGGGACAGCAAAATCGCTGCAATTTTGGCCCCAAAAATCTTTTGATGCCGCCTATATTCACATTTACCGGTTTGTTGATAATGGAAAACTTGAGCTTTTGCACAAGACCCAAGTAGATGGTATCCCACTGGCTCTAAGCCAATTCCAGGGAAGATTACTCGCCGGAGTAGGACAGGTGCTCAGGCTATATGACTTGGGCAAGAAGAGGCTGCTCAGAAAGTGTGAGAATAAGCTGTTCCCAAACACAATAATGTCTATACACACCTACCGTGACCGTATATATGTCAGTGACATCCAAGAGTCATTCCACTACTGCAAGTATAGAAGAGACGAGAACCAGTTGTATATATTTGCTGATGATGTTTATCCCAGATGGCTTACTGCAGCACACCATGTAGATTTTGACACCATGGCAGGTTCCGACAAGTTTGGAAATGTCTATTTTGTTCGGCTGCCTCAGGATGTCTCTGATGAGATTGAAGAAGACCCAACTGGTGGGAAAATTAAATGGGAACAAGGGAAGCTAAATGGAGCCCCTAACAAGGTTGAGGAGATTGTCCAGTTCCATGTTGGCGATGTTGTAACCAGTTTGCAGAAGGCTTCACTCATACCTGGTGGTGGAGAGTGCATCATTTATGGGACTGTGATGGGGAGCTTGGGGGCATTTCTTCCTTTCACCTCTCGTGATGATGTTGACTTCTTTTCTCACTTGGAAATGCATATGAGGCAGGAGCACCCACCTTTATGTGGCAGAGATCATATGGCATACAGATCTGCGTATTTCCCTGTTAAGGATGTGATTGATGGTGATCTTTGTGAACAGTTCCCAACCCTACCAATGGATCTGCAGCGGAAAATCGCTGATGAATTGGATAGAACACCAGCAGAGATTCTAAAGAAACTAGAAGAAATTAGAAATAAGATAATCTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_94164.p1 GENE.S_Transcript_94164~~S_Transcript_94164.p1 ORF type:5prime_partial len:1267 (+),score=304.25,MMS1_N|PF10433.5|1.5e-167,MMS1_N|PF10433.5|8.6e+02,CPSF_A|PF03178.11|66,CPSF_A|PF03178.11|1.4e+03,CPSF_A|PF03178.11|5.7e-99 S_Transcript_94164:2-3802(+)
RLSAYSNLSITPVLPNSPLSFFLSFVPPSLLSPRRDLKPYSGTLGFLSLFCEIKSKTMYLYSLTLQKPTGIVCAINGNFSGGKIQEIVVARGKILDLLRPDDNGKIQTLLSVDVFGAIRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNKEKNVFDKVHQETFGKSGCRRIVPGQYLAIDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKTHTITYSISGVDCGFDNPIFAAIEMDYSEADQDSTGQAAAEAQKHLTFYELDLGLNHVSRKWSEPVDNGANMLVTVPGGGDGPSGVLVCAENFVIYKNQGHPDVRALIPRRADLPAERGVLIVSAATHKQKSMFFFLLQTEYGDIFKVTLEHGSEGVTELKIKYFDTIPVSSSMCVLKSGFLFAASEFGNHALYQFQAIGDEPDVESSSARMMELETEEGFQPVFFQPRRLKNLLRVDQVQSLMPIMDMKVINLFEEETPQIFSLCGQGPRSSLRILRPGLGITEMATSPLPGVPNAVWTVKKNVNDEFDAYIVVSFASVTLVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRHIREDGRINEWRTPGKRTIVKVGYNRLQVVIALSGGELIYFEVDMTGQLMEVEKHEMPGDVACLDIAPVPEGRQRSRFLAVGSYDNTIRILSLDPDDCMQVLSLQSVFSPPESLLFLEIQASTGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRAPKLFSIIVRGRRAMLCLSSRPWLGYIYQGHFLLTPLTCGTLEFAASFSSDQCAEGVVAVAAEALKVFTIERLGETFNETVIPLRYTPRKFVLQPKRKLLVMIESDQRALTAEEREASQKECFASGVDENGNVEMENGDDDEENQLSDEQYGYPKAEKEKWVSCIRVLDPRTEETVCCLELQDNEAAFSLCTVNFHDKEHGILLAVGTAKSLQFWPQKSFDAAYIHIYRFVDNGKLELLHKTQVDGIPLALSQFQGRLLAGVGQVLRLYDLGKKRLLRKCENKLFPNTIMSIHTYRDRIYVSDIQESFHYCKYRRDENQLYIFADDVYPRWLTAAHHVDFDTMAGSDKFGNVYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKVEEIVQFHVGDVVTSLQKASLIPGGGECIIYGTVMGSLGAFLPFTSRDDVDFFSHLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRTPAEILKKLEEIRNKII*

Click here to download the sequence:
Link to NCBI Protein BLAST