Transcript Information: S_Transcript_94524.p1


Annotated TAIR IDAT5G55840.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:22598038-22601688 | Forward length=1136
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.3507621531051
Replicate 26.6149457227117
Replicate 36.5866914584288
Condition 2: 8 Hour
Replicate 16.7511597212088
Replicate 26.6878806780135
Replicate 35.6579101667543
Condition 3: 24 Hour
Replicate 17.6861627096535
Replicate 27.4946466853001
Replicate 37.5621649891882


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_94524.p1 GENE.S_Transcript_94524~~S_Transcript_94524.p1 ORF type:complete len:1134 (+),score=205.43,PPR_2|PF13041.2|2.1e+03,PPR_2|PF13041.2|1.7e-06,PPR_2|PF13041.2|1e-07,PPR_2|PF13041.2|4.4e-09,PPR_2|PF13041.2|3.3e-17,PPR_2|PF13041.2|1.5e-11,PPR_2|PF13041.2|4.2e-16,PPR_2|PF13041.2|3.2e-17,PPR_2|PF13041.2|1.7e-10,PPR_2|PF13041.2|1.9e-12,PPR_2|PF13041.2|8e-08,PPR_2|PF13041.2|2.5e-07,PPR_2|PF13041.2|2.1e-08,PPR_2|PF13041.2|4.2e-09,PPR_2|PF13041.2|1.2e-16,PPR_2|PF13041.2|0.00036,PPR_2|PF13041.2|1.8e-10,PPR_2|PF13041.2|9e-10,PPR_2|PF13041.2|6.7e-07,PPR_2|PF13041.2|8.8e-06,PPR_2|PF13041.2|0.0012,PPR_2|PF13041.2|0.0058,PPR_2|PF13041.2|4.8e-06,PPR_2|PF13041.2|4.7e-13,PPR_2|PF13041.2|1.1e-15,PPR_2|PF13041.2|1.1,PPR_1|PF12854.3|1.1e+02,PPR_1|PF12854.3|6.1e+03,PPR_1|PF12854.3|4e-05,PPR_1|PF12854.3|7.2e-07,PPR_1|PF12854.3|3e-08,PPR_1|PF12854.3|1.5e-07,PPR_1|PF12854.3|9.8e-13,PPR_1|PF12854.3|3.2e-05,PPR_1|PF12854.3|2.6e-09,PPR_1|PF12854.3|2.5e-06,PPR_1|PF12854.3|0.00018,PPR_1|PF12854.3|0.0096,PPR_1|PF12854.3|0.0053,PPR_1|PF12854.3|0.88,PPR_1|PF12854.3|4.7e-07,PPR_1|PF12854.3|2.7e-05,PPR_1|PF12854.3|9,PPR_1|PF12854.3|0.019,PPR_1|PF12854.3|1.9,PPR_1|PF12854.3|0.0056,PPR_1|PF12854.3|0.16,PPR_1|PF12854.3|2.3e+02,PPR_1|PF12854.3|1.7,PPR_1|PF12854.3|1.7e+02,PPR_1|PF12854.3|1.1e-07,PPR_1|PF12854.3|3.6e-10,PPR_1|PF12854.3|5.8e+02,PPR|PF01535.16|4e+02,PPR|PF01535.16|0.0082,PPR|PF01535.16|9.4e+02,PPR|PF01535.16|0.0066,PPR|PF01535.16|4.1e-05,PPR|PF01535.16|0.00025,PPR|PF01535.16|9.1e-06,PPR|PF01535.16|4.1e-08,PPR|PF01535.16|6.8e-05,PPR|PF01535.16|1.4e-07,PPR|PF01535.16|2.2e-05,PPR|PF01535.16|1.1,PPR|PF01535.16|0.018,PPR|PF01535.16|0.00057,PPR|PF01535.16|9.2,PPR|PF01535.16|7.6e-07,PPR|PF01535.16|0.014,PPR|PF01535.16|0.02,PPR|PF01535.16|0.00028,PPR|PF01535.16|0.0032,PPR|PF01535.16|0.06,PPR|PF01535.16|0.16,PPR|PF01535.16|5,PPR|PF01535.16|0.2,PPR|PF01535.16|2.6,PPR|PF01535.16|0.0011,PPR|PF01535.16|3.7e-09,PPR|PF01535.16|9.9,PPR_3|PF13812.2|1.1,PPR_3|PF13812.2|22,PPR_3|PF13812.2|2.1e+02,PPR_3|PF13812.2|0.15,PPR_3|PF13812.2|2.5,PPR_3|PF13812.2|0.035,PPR_3|PF13812.2|5.2e-05,PPR_3|PF13812.2|0.0019,PPR_3|PF13812.2|0.19,PPR_3|PF13812.2|0.36,PPR_3|PF13812.2|4.5,PPR_3|PF13812.2|5.8,PPR_3|PF13812.2|0.16,PPR_3|PF13812.2|0.00096,PPR_3|PF13812.2|7,PPR_3|PF13812.2|0.0075,PPR_3|PF13812.2|2.9e+02,PPR_3|PF13812.2|0.052,PPR_3|PF13812.2|37,PPR_3|PF13812.2|0.1,PPR_3|PF13812.2|47,PPR_3|PF13812.2|0.46,PPR_3|PF13812.2|5.5e+02,PPR_3|PF13812.2|0.014,PPR_3|PF13812.2|3.2e-06,PPR_3|PF13812.2|1e+02 S_Transcript_94524:247-3648(+)
ATGGGTTCCTCTTTGGTTCCTTCAACAATCAAGAAACTCTCTTTACTTCCCAAAAAAACCTCAAACTTTCGAGCTTTGTCTCACTTCAACTCGTCCCATTTTCTGGGTAACAAGCTAAGCATCCAGAAAGTTCCTACTGCAACATGGAACAACACCCAATTGCCTGGGGATATTGAGAATAGCATTTATGCAATCCTCACTATCGATCGTTGGGAGTCACTGAACCACATGGGATATAAGCTGGCTTCACTCAGAACAGTTCATGGGAGACTTGCTTTGAAATTTCTCAACTGTGTCATTGAGCAGCCTGGTTTGAAGTTGAATCATGTGATCCATATGTATTGTATTACTATTCATATACTAGCTCGAGCTAGGATGTATACTTATGTGAAGTCTCTCTTGAAGCGTTTATCTCGCATGGATTTGGGTCCGAATCCCATTTTTGGTGCTCTCATGGGAACTTATCGTCTTTGCAACTCGAACCCTTCAGTTTTTGACCTTTTATTAAATTTATATTTGAAAGAGGGACAGGTTAATTCTGCTTTAAAGATATTTCATTTGATGGGTTCCCGAGGATTTAACCCTTCAATTTATACTTGCAACAAGATCTTAGCCGCAATAGTGCAATGTCAGAGTTCTGGGGTGGCTTGGGCTTTCTTTAAGGAAATGCTTGCGAGGAGGATTTGCCCTGATGTTATTACATTTAATATACTATTGAATATTTTATGTGTGGAAAGAAAGCTTAAGAAAGCTGGGTATCTCCTGGGAAAGATGGAGGAGGCTGGTTATAATCCAAATGTGGTTACTTATAATACTGTGCTCAGTTGGTATTGCAAAAAGGAGCGATATAAAGCTGTCTGCGATCTTCTAGATCGCATGAGTTGTAAAGGAATAAAAGCAGATGTATGTACATACAATATGTTAATTGACAGTTTGTGTAGGAATAATAGGAGTGTGAAAGGGTATTTACTATTGAAAAGGATGAGGAAGGAGAAGACACTGCCAAATGAGGTGACTTACAATGCTCTTCTGAAAGGATTTATCAAGGAGGGGAAGCTTGGAGTTGCTACTAAGGTATTTGATGAGATGACGAAGGTCGGAATATGTCCCAACATTATTACGTACAACACATTGCTTGATGGGCATTGTTGTCAGGGTAATTTTGACGAAGCTCTTAGACTTTTTCATAGAATGGAAGCAGTAGGGCTGGCACCTAATGAAGTTACTTATGGGACTCTTTTGAATGGATTGTATAAGCATGGTAAATTTGCACTTGCTAGAAGTATACTTGAGAGGATGAGAGCAAATGGGGTGACAGTCAGTTGCATTATGTACACAATGATGATTGATGGATTTTGTAAAAATGGGATGCTTAATGAAGCTGTAGATTTGCTAGAAGCAATGACCATGGATGGAGTATGTGCTGATTTAATTACATATTCAGTGTTAATTAATGGATTTAGCAGAGTGGGGAAGATGCATAATGCAAAGGAGATATTGTGTAAGATGTACAAGGCAGGTGTCCTTCCTAACGGTATCATATACAAAACAATGATTTACAATTCTTGTAGGCAAGGAAGTGTTGCAGAGGCCTTCAAACTGTATGCAAGTATGAACTTTGGTGGACATGAGGCTGATCTTCGTACATGCAATATTTTGGTTGCTGCTCTCTGTAAATGTAATATGTTTCAAGAGACCTTGGATTTCATGCAGCACATGGGTAGAATGGGCATCAAATCTAATTCCATTACTTTTGGCTGTATGATTGATGGATACTCGAGTATTGCTGATGTGTCAAAAGCATTTACTTACTTTGATGAGATGGTTAGTTTAGGTTACGATCCAAGTTTTCCGACTTATGGGAGTCTGCTAAAAGGAATCTGTAGGGGTGGCTACTTGAGGGAAGGCAAAACTTTTTTAAGATCATTCCAAAATATTACTGGTGGGTCAGATGCTGTTGCTTACAACACATTGCTTGCTGCAATGTGTAAATGTGGCAGATTGACAGAAGCAGTGAACCTCTATCATGAAATGATCCAAAGTAACCTTATTCCTGATAGTTACACTTATACTTGTCTTTTGAGTGCTTTGTGTAAGAAAGGAAAAATCGTCACTGCAGTTCTCTTTTTAGGAGATTTAATGAACAAGAATATGATTTATCCTTGCCAAGGGGTGTATACGGTTTTGATAGATGCACTATTCAAGTCTGGTTTTCCAAATGTTGCTTCCTATGTCTATGAAGATATGGTGAAGGAAGAGGTCAACCCTGATGTAGTTGCTGCTAATGTTGTTATTGATGGCTATTCCAGGAAGGGTCAGATGGTGAAGGCAAATGAAGTCTTCCATTTGATGAATGATAAATCCTTTCCTAGTTTGGCTTCTTATAACATTCTTTTACATGGGTTTGCAAAGCAACAAGAACTGTCAAAGTGCTTTACTCTATACAGTACTATGATGAGCAGGGGTTTCATACCTGATGCTGTAACTTGCCATTCTCTCATTCTTGGACTCTGTGAGTCACTGAATTTGGAACTTGCTGTCAAGTGTCTGAAGAAGATGATATTGGACGGAAACGTTCCTGATGCACATACATTCAACATGATTATAAGAAAATTTGGTGAATGTGGTGAGATGGAAAAAGTGTTTGATCTGACAGATCTGATGATGACAGTAGGAGTGCCTCCTGATAGAGCTATCTACGATGCCATTCTCGATGGACTTAACAGAAGGTCTTCTTTCCAGCAGTCGCATATGGTTTTTCATGAAATGCTGGAAAAGGGTTATGTTCCTAGCCCCAGACAGTACTTAACCCTAATGAAAGGTATGCTGAGGGCAAGAGATATAAAAGGCGCATTCAGGCTCAGAGATGAGATGGTCACCCAAGGTGTGAGGTCCTATGATGTAGCTGAGAGTGCTATTGTACGCGGACTAGTGCATTGTGGAAAGATTGATGATGCAAGATTTCTTTTTGACTGTATTCTTCGGATGCAGCTAGTTCCTTCCATCTCTACATTTACAACTCTGATGCATGGACTCTGCAAACAAAATAGACTTGCAGAGGCGCTGAAGCTGAAGGAAATCATGGAACAGTACCAACTACAGCCTGATGTCATTGCTTACAATGTTCTTATTTCAGGTTTTTGTGCTAGCGGTGATACTGATATGGCTTTTGAACTTTATGAAGAGATGAAACAAAGGGGTCTTTGGGCAAATACCACCACTTTCGAGGTTCTCATCAATGCTGTAGTTGCTAAACATGACCTTGACAAAGGTCGAACTCTTTTGGTGGATATGCAGGAGAGAGGATTTATATCTCAAATGGGTAGCTCAAGTGACATGTGTCACCTTTTGGTGATTGCTTTAGAAAAAATCAAGTTCTTGAGACATGAGACTAAGAAATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_94524.p1 GENE.S_Transcript_94524~~S_Transcript_94524.p1 ORF type:complete len:1134 (+),score=205.43,PPR_2|PF13041.2|2.1e+03,PPR_2|PF13041.2|1.7e-06,PPR_2|PF13041.2|1e-07,PPR_2|PF13041.2|4.4e-09,PPR_2|PF13041.2|3.3e-17,PPR_2|PF13041.2|1.5e-11,PPR_2|PF13041.2|4.2e-16,PPR_2|PF13041.2|3.2e-17,PPR_2|PF13041.2|1.7e-10,PPR_2|PF13041.2|1.9e-12,PPR_2|PF13041.2|8e-08,PPR_2|PF13041.2|2.5e-07,PPR_2|PF13041.2|2.1e-08,PPR_2|PF13041.2|4.2e-09,PPR_2|PF13041.2|1.2e-16,PPR_2|PF13041.2|0.00036,PPR_2|PF13041.2|1.8e-10,PPR_2|PF13041.2|9e-10,PPR_2|PF13041.2|6.7e-07,PPR_2|PF13041.2|8.8e-06,PPR_2|PF13041.2|0.0012,PPR_2|PF13041.2|0.0058,PPR_2|PF13041.2|4.8e-06,PPR_2|PF13041.2|4.7e-13,PPR_2|PF13041.2|1.1e-15,PPR_2|PF13041.2|1.1,PPR_1|PF12854.3|1.1e+02,PPR_1|PF12854.3|6.1e+03,PPR_1|PF12854.3|4e-05,PPR_1|PF12854.3|7.2e-07,PPR_1|PF12854.3|3e-08,PPR_1|PF12854.3|1.5e-07,PPR_1|PF12854.3|9.8e-13,PPR_1|PF12854.3|3.2e-05,PPR_1|PF12854.3|2.6e-09,PPR_1|PF12854.3|2.5e-06,PPR_1|PF12854.3|0.00018,PPR_1|PF12854.3|0.0096,PPR_1|PF12854.3|0.0053,PPR_1|PF12854.3|0.88,PPR_1|PF12854.3|4.7e-07,PPR_1|PF12854.3|2.7e-05,PPR_1|PF12854.3|9,PPR_1|PF12854.3|0.019,PPR_1|PF12854.3|1.9,PPR_1|PF12854.3|0.0056,PPR_1|PF12854.3|0.16,PPR_1|PF12854.3|2.3e+02,PPR_1|PF12854.3|1.7,PPR_1|PF12854.3|1.7e+02,PPR_1|PF12854.3|1.1e-07,PPR_1|PF12854.3|3.6e-10,PPR_1|PF12854.3|5.8e+02,PPR|PF01535.16|4e+02,PPR|PF01535.16|0.0082,PPR|PF01535.16|9.4e+02,PPR|PF01535.16|0.0066,PPR|PF01535.16|4.1e-05,PPR|PF01535.16|0.00025,PPR|PF01535.16|9.1e-06,PPR|PF01535.16|4.1e-08,PPR|PF01535.16|6.8e-05,PPR|PF01535.16|1.4e-07,PPR|PF01535.16|2.2e-05,PPR|PF01535.16|1.1,PPR|PF01535.16|0.018,PPR|PF01535.16|0.00057,PPR|PF01535.16|9.2,PPR|PF01535.16|7.6e-07,PPR|PF01535.16|0.014,PPR|PF01535.16|0.02,PPR|PF01535.16|0.00028,PPR|PF01535.16|0.0032,PPR|PF01535.16|0.06,PPR|PF01535.16|0.16,PPR|PF01535.16|5,PPR|PF01535.16|0.2,PPR|PF01535.16|2.6,PPR|PF01535.16|0.0011,PPR|PF01535.16|3.7e-09,PPR|PF01535.16|9.9,PPR_3|PF13812.2|1.1,PPR_3|PF13812.2|22,PPR_3|PF13812.2|2.1e+02,PPR_3|PF13812.2|0.15,PPR_3|PF13812.2|2.5,PPR_3|PF13812.2|0.035,PPR_3|PF13812.2|5.2e-05,PPR_3|PF13812.2|0.0019,PPR_3|PF13812.2|0.19,PPR_3|PF13812.2|0.36,PPR_3|PF13812.2|4.5,PPR_3|PF13812.2|5.8,PPR_3|PF13812.2|0.16,PPR_3|PF13812.2|0.00096,PPR_3|PF13812.2|7,PPR_3|PF13812.2|0.0075,PPR_3|PF13812.2|2.9e+02,PPR_3|PF13812.2|0.052,PPR_3|PF13812.2|37,PPR_3|PF13812.2|0.1,PPR_3|PF13812.2|47,PPR_3|PF13812.2|0.46,PPR_3|PF13812.2|5.5e+02,PPR_3|PF13812.2|0.014,PPR_3|PF13812.2|3.2e-06,PPR_3|PF13812.2|1e+02 S_Transcript_94524:247-3648(+)
MGSSLVPSTIKKLSLLPKKTSNFRALSHFNSSHFLGNKLSIQKVPTATWNNTQLPGDIENSIYAILTIDRWESLNHMGYKLASLRTVHGRLALKFLNCVIEQPGLKLNHVIHMYCITIHILARARMYTYVKSLLKRLSRMDLGPNPIFGALMGTYRLCNSNPSVFDLLLNLYLKEGQVNSALKIFHLMGSRGFNPSIYTCNKILAAIVQCQSSGVAWAFFKEMLARRICPDVITFNILLNILCVERKLKKAGYLLGKMEEAGYNPNVVTYNTVLSWYCKKERYKAVCDLLDRMSCKGIKADVCTYNMLIDSLCRNNRSVKGYLLLKRMRKEKTLPNEVTYNALLKGFIKEGKLGVATKVFDEMTKVGICPNIITYNTLLDGHCCQGNFDEALRLFHRMEAVGLAPNEVTYGTLLNGLYKHGKFALARSILERMRANGVTVSCIMYTMMIDGFCKNGMLNEAVDLLEAMTMDGVCADLITYSVLINGFSRVGKMHNAKEILCKMYKAGVLPNGIIYKTMIYNSCRQGSVAEAFKLYASMNFGGHEADLRTCNILVAALCKCNMFQETLDFMQHMGRMGIKSNSITFGCMIDGYSSIADVSKAFTYFDEMVSLGYDPSFPTYGSLLKGICRGGYLREGKTFLRSFQNITGGSDAVAYNTLLAAMCKCGRLTEAVNLYHEMIQSNLIPDSYTYTCLLSALCKKGKIVTAVLFLGDLMNKNMIYPCQGVYTVLIDALFKSGFPNVASYVYEDMVKEEVNPDVVAANVVIDGYSRKGQMVKANEVFHLMNDKSFPSLASYNILLHGFAKQQELSKCFTLYSTMMSRGFIPDAVTCHSLILGLCESLNLELAVKCLKKMILDGNVPDAHTFNMIIRKFGECGEMEKVFDLTDLMMTVGVPPDRAIYDAILDGLNRRSSFQQSHMVFHEMLEKGYVPSPRQYLTLMKGMLRARDIKGAFRLRDEMVTQGVRSYDVAESAIVRGLVHCGKIDDARFLFDCILRMQLVPSISTFTTLMHGLCKQNRLAEALKLKEIMEQYQLQPDVIAYNVLISGFCASGDTDMAFELYEEMKQRGLWANTTTFEVLINAVVAKHDLDKGRTLLVDMQERGFISQMGSSSDMCHLLVIALEKIKFLRHETKK*

Click here to download the sequence:
Link to NCBI Protein BLAST