Transcript Information: S_Transcript_94846.p2


Annotated TAIR IDAT4G30150.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Nucleolar 27S pre-rRNA processing, Urb2/Npa2 (InterPro:IPR018849); Has 58 Blast hits to 49 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 44; Viruses - 3; Other Eukaryotes - 7 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr4:14742452-14749764 | Forward length=2009
E-Value4E-67
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.4650984130885
Replicate 22.6275155805736
Replicate 32.7193448289619
Condition 2: 8 Hour
Replicate 13.4265750036981
Replicate 23.2141030181838
Replicate 32.8206225564248
Condition 3: 24 Hour
Replicate 12.188617816638
Replicate 22.0564517120315
Replicate 31.6210765780226


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_94846.p2 GENE.S_Transcript_94846~~S_Transcript_94846.p2 ORF type:complete len:529 (+),score=84.37 S_Transcript_94846:88-1587(+)
ATGGCGGACTCAGAAGCAAGGAAAAGCAAATCAGTAAAGAAGGGAAAAAAGAGAAAGCTCACAGATACAGAACACCACCAGCACAAGTCAAAGCCTTCCAAATTAGCCCGCAACGAAAATGAAAGACGACAATCAGAAGAACAAGTACAACAGCTGTGTGCTGTTCAAGAGAAAGAAACACTGGCAAATATGGAGGTGGAAGAACAACAAACCACGTTGAAAAGTCAAGAGGTTCATCAATGGAGGAACTTAGAGTTGGTTTTGTCAATCCAAAGCAAAGAATTTAGTGCCCACAAGAAAGTAGAGTTAATCTTTGATTTTGTGAATTCAAGAGCCAACAAAGAAGAAAATGACACAATAAATGATTTCAATGTGCTGAGTATGTCCCAATTGATAACATACACAAGTAGCTGGATTCAGTCAATCTTACTTACGTCTGAAAGGAGGATTCGGGCTGGAGACAATGAGTCTGAAGAATCACAGTTGTGCCTGGATCATAGATGCTGGGAGGTATTTAAATTTTGCTTGGAGAATTCCTTAAAGTTGCACGTTTCTTTGAGCTTATCACGGGATCTATTGAAGGTGATCTCATGTGTTGCCAAAAGTGCATTGGACTCTATCAAGTCTGTTCATGCAGATATCAAAGAATCCATTTTTAGCCTTGAAGAGTTTCAGTTTTACAATACTGTGAGTGACTGCATAAAATTTCTATTTTCTTCCCATGGCCGACTGCTGAATGGGAATCTGGACTTGTGGGCTGTGACTGTTAACCCAGTGCTTGAGCTTGTAATTAAAATTTATAGCGAGAATCTTCAAGATAGTGGTGTAGGGATATTGAATTTACAGTTTTCATGTTGGGTCCTTGACCCGTTTTCCAAGTTTCTAAGAATGCACCCAGGTCGCAAGAATGGATTTCGTGATTTTGTAGACAAACTTCTAGAACCACTACTGCATTTTCTTGGTTTGTTGCATGATCGGATCAGGGACAGCAACCATGTTTTGAGGCAAAGCTTATTCAATTTGGTTGAAGAGATTTTGTCTTATGGACTATTTCATCCAGTTCACCTCGACGAATACCTTCGCATCCATAGTGCAGAGAAATATAGCTCTTCAGCGGATGGAAAATTGGAAAATACAAGAACAACAATCAAAAGTTATCACAGACACCTTTTTGACAAACTAGAGAGCCTAATTTCTGAGAGAAAGGTACAGGCTATGACTGGCATTGGAGAAATGTTTCGCTTGTTTGTTGATTGTGTGAAAAAGCACAAGAAGGATTCACTTGATGCAGAGAATTCCAAGGATGCAAGAAGTCAGCCCACAAAGCATGGTGGGAAGATTGGTAATTCTTCTTTAGAAAGGAGCGATCATGTGAATACTCCTAACTCAGTTATGAGGAAGCCGGTTTTTCATTTCTTTGGAGCCTTTGTTAATTTATCTGAAAAAGCTTCTTCAGTCAGACCTTCAGGCTGGAGCTTCATTGTTGGATGTTTACTATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_94846.p2 GENE.S_Transcript_94846~~S_Transcript_94846.p2 ORF type:complete len:529 (+),score=84.37 S_Transcript_94846:88-1587(+)
MADSEARKSKSVKKGKKRKLTDTEHHQHKSKPSKLARNENERRQSEEQVQQLCAVQEKETLANMEVEEQQTTLKSQEVHQWRNLELVLSIQSKEFSAHKKVELIFDFVNSRANKEENDTINDFNVLSMSQLITYTSSWIQSILLTSERRIRAGDNESEESQLCLDHRCWEVFKFCLENSLKLHVSLSLSRDLLKVISCVAKSALDSIKSVHADIKESIFSLEEFQFYNTVSDCIKFLFSSHGRLLNGNLDLWAVTVNPVLELVIKIYSENLQDSGVGILNLQFSCWVLDPFSKFLRMHPGRKNGFRDFVDKLLEPLLHFLGLLHDRIRDSNHVLRQSLFNLVEEILSYGLFHPVHLDEYLRIHSAEKYSSSADGKLENTRTTIKSYHRHLFDKLESLISERKVQAMTGIGEMFRLFVDCVKKHKKDSLDAENSKDARSQPTKHGGKIGNSSLERSDHVNTPNSVMRKPVFHFFGAFVNLSEKASSVRPSGWSFIVGCLL*

Click here to download the sequence:
Link to NCBI Protein BLAST