Transcript Information: S_Transcript_94847.p1


Annotated TAIR IDAT4G30150.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Nucleolar 27S pre-rRNA processing, Urb2/Npa2 (InterPro:IPR018849); Has 58 Blast hits to 49 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 44; Viruses - 3; Other Eukaryotes - 7 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr4:14742452-14749764 | Forward length=2009
E-Value1.6E-153
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.2897062673647
Replicate 25.3832090829335
Replicate 33.9520148750573
Condition 2: 8 Hour
Replicate 15.4728877805032
Replicate 25.6000329085536
Replicate 35.443490791664
Condition 3: 24 Hour
Replicate 13.7282670938435
Replicate 23.4525781225662
Replicate 33.2842864396043


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_94847.p1 GENE.S_Transcript_94847~~S_Transcript_94847.p1 ORF type:complete len:1582 (+),score=266.86,Urb2|PF10441.5|87,Urb2|PF10441.5|3.9e-38 S_Transcript_94847:1622-6367(+)
ATGCTTGAGAGGGATTACGTAAGAACGGAGGGTGATTTTGGAGGATCCTGTCTTAATTTTTTAAAGATAATTTATCATTTGTTACTTTCATGTTATGCCAGATTTAATCAACTATGGCAGGCAATATGCCGTCTTGACAGGTCTCCACAGATGGAAATATTGAATTCACTGGCCAAGGAGTTCATTCTTGTAGTTCAGAACTTCTTGGAAATTGAGTATGAAGTCATTGGGGATGACTTGGTTAGTATATGGCTTATGATTCTCAGTTTTTCAGCAATGGCGCATTCTTCAGAAGATGCTTCGCTATTTTCAGGGGCTGTCAATCTAGGATGCCAGGTGTTTGATCTATACAGTGAGCTTCGTCAGGTGAATCGTGCTGTTTTTACACTGTGTAAGGGACTGAGACACCTAGCATTCTATCAAGGAGACAATGAAATCAAATATTCGGAACTCTTGACACCTGAGAGAAACCATCATTTTGATAAATTTGCCAAATCAGGTCGATCGTTATTATGCTCTCAAAAGTTTAGGCTGGCCATTTGCAATGCAATCAAATCTATACCTGAAGGGCAGGCCAGTGGATGTGTTCAAACTTTAACAGATGACATTTCAGATTCCTTGGCATGGATGAAAGTTGGTTGTTCAGTGACCGATGAACATGAATTTGGAGATGCTGCATCTTGTAGATTCACAATTCAAGCAGAACTTCTTGGAATTGTCTTGTCTGAAATTTGTTCTATGGTTCTGGATTCTCTTTCAGTCACTCCTGGTAATTGTTACCTTATGGGCGTTTCTATAAGGAACCTGATAATGGTACTCCATGCCAGCATGATCCATCTAGTTACCCCTGAACAAGATGGTGTTGATGAGTTTCTCTTATCTGTCACGGGAATAACTATTGAAAGGAACAAGGTGAAATGTAATAATGATTTGCAGGATAAGATTCCCTTGGTTATGTTATACTTCTTTCGTTTATATATGTCCTGCCGGAGCTTATGCCGACAAGCAGTCAGCCTCATGCCTCCAGACTCTTCAAGAAAGATTTCAGGCTTGATGGCTGACTATTATACGGCATACTCAGGTCAGGATTGCATGGAGAGGGCTGATTTTGAAGATGAGGGTTACTTTTCATGGATTGGTCGACCTTCAGCATCTCTTCTGAGTGTTGTGCAATATATCAGGGACAATTTTCTTCAACAAGTGTCTGCGGATTACTGTTCTTTGATATATGTATTCCATATTATGGCTTTTCAAAGGCTTGTTGATCTCAATAGGCAAATACAATCCGTACAGTATATTGTACAGAGAAACAAAAATGTAATTCATGATGAATTGATGGATGATGGTGACCTGGTGATTCTGCATGATAACAAAAGGAAGCAGGAGAGATTTTTGTCATATTTGAAGCAAGAAGCCATTGATCTTACTGATTTTATCATGGAATACCTTTCATTAGTCGATAAGAAGCAACTTCAGCTTAGTCGGGAAACCACAAGGAGTCTGTCCCCTCAGCACACGGAAATTGATTCTTGGGATCTGGGTATCTGTACAGTGAATGAGAAGACACTGCCTACTGCTGTTTGGTGGATTATTTGCCAAAATATTGATATATGGTGCAATTATGCTACTAAGAAGAAGTTGAAGTTGTTTCTCTCACTTTTGATCAATAATTCACTTCCATATGGTAGGTGTGGAGGTGTTGAGAAGCAAACTCAGAATGATCTTGGTGAGGGAATTAAAGTTACTAAACATCAAATTGCACAAGAACACCTTCGTGACACCACTTTGTATGATCAAAGATTTGTGTGCAGGCATATGGCTGCAAGGATTTGCAATAGTCTGAAGAAGTGTGCATCTTTGTTACTCAAAGGTTTCCCAACCGTTGATGCAGAGTTGAATTCTGCTGATTGGGAACAGGTCTTGAGTGTTACAAATAATTCATCTGTGGCCGAAAGAGACGGGCTACGTACTTCTTATTGTACTTATAGTGACTTGATCAACAGATGTTCCAACACTAAATCATTATCTTCAACTATCAGTTTGCACATTGCTGCATGTCGGAGGTTATTGGATCTTTTGTGCCGTATGAAGGAGAAATTGTTAAGCTTCAAGTCTTTCTCACGTTGTGTGATGTATTTGGTCAACTTTGAAAGGCTTGTAATTAACAGCTTCGTATATCCTCATGGAAAATCATGCTTGCATGAATGCCATCAGCTCCTTGGTCTGTTGGTTTCTTGCCGTAGAGCTCTGAAATATCTGCTTATAGCATTTATCGAGGAGAACGTTGAGTCAAGTAATTTATCAGCCCTTCCTATATTCTCTGGGAGTTCATCACCTCCTTTATGGTTGTTGAAATCTGTTTACTTGGTGGTTGCATGGTGGAGCCCCTTGTCATCAGAACATAGTGGTGAAGTGAATGATATGATCTTCTCTCTGATGGATCACACATCCTATATGTTTTTCACACTAGGCAAGCATCAATTTAGTTTGGCACTTAAATCCGTTTTGAGCCCTAAGAGTATTAAAAATTCTTCTTTGCTCTGTGGAGGGGATCATTCAAATGAATCCAATAGTTGCGTAAAATTATCGAAACATGTTGGAACTAGTAAAACTGTCACCACTACAGTTGAGATGTTGGAGGATCAGATAAAAAGCAGCCTCTCCTCTCTGAGCGACGCGTTTAATAATGGTAATGCTGAGCTTCGTGTACAACTAGCAGATTTGAACAAATTATCGTCTGTAGTTTCTTGCATTCAAGGTTTTCTATGGGGATCGGAGTCTGCTCTTTGTGATCTAAATGCAAGTGGTAATGATTTGAAAGCAAAAATGAGAAAGTGTAAACATAAGACAATATTAGGAATAAAAAGTTTCGTTGAGATATTTGTGGAGTTCCTAAGTGTTTCCTCGCGGATCTTTCTTCATAATGATCAGCCACTCAAAATTTCATGTGACAGTGAAGAGCAGTTGAACTTAGATCGTAACAGTGGTGTTCAGGGGACTGAGGCATCCCTAGAGAAGGGTTTAAGTTATGGAAGTGAATCTGAAAATGAGAATCAGGAAGAGAATTCAGTGCCCGGAAAGGTGGGTTTAGCTTCATCTGATGTTCAAGATGATTCTGATACTGGTGGCAAGAAAGAAAGCTTGCAATCTGATAATCCGGATAGTTGCATTGGTGGTCTAACTGGCCTTGGCTCATTTAAGTACAACTGTTTGAGGATTGATTTGCTGCAAAGCTTTTTAAGTGGTCAAAATCTCGAGGCTGCATTTTTCCTTAGAGAATTACTTATTGCTTCTTCTACTATTGTGAGCCTAAGCAGGCAAATTGGTTGTTCCCCCCTGCCAACCAACTTGATTCAAATTTTCGCTGGATGTTCTGAAGTCTTGTTAATGAAATTTTCAGGCATGCCTAAGCCAACGTCTGTTATTTGGTTAGATGGTACAGTTAAGTTCCTTGAAGCATTAGGGAGTCAGTTTCCATCAGCTAGTCCTGCCACAACAAGAGATGTCTACTCAAAACTGGTAGAGTTGCACTTAAAGGCTATTGGAAGATGCATTGCTTTGCAAGGAAAAGGAGCTACCTTAGCTTCTCATGACGTCGAGTCAAGTGCCAAGATATATAGTGAAGGAAAAGTTTCGGAATCAACTGTGTCAGATGCTCTCTATGGCTTAGACGAGCTCAAGGCTAGGCTGAGAATATCGTTCAAGGTTTTTATTGAGAAATCATCTGAAATACACCTATTATCTGCTCTACAAACTCTAGAAAGGGCACTAGTTGGTGCACGAGAAGGCTGTACAAAGAACTATGAGGTAGAAATGGATAGTGCATATGGGGGTAAAGTTTCTTCAATGGTTGCAGCTGGTATCGACTGCTTAGACTTGATACTTGAATTTGTCAAAGGACAGAAAAGATTGAGTATAGTTGGAGGGAACATGAGCAGCCTTTTCGCTTCATTGCTGAATATCATTGTACACCTGCAAGGTCCTACATTATTCTGCCAGAAACCAAACAGTGTGGTGGTCAATAAGAACCCTGACTCCGGATCAGTAGTTGTCATGTGTATTGAGGTATTAACCAGAGTTGCTGCCAAGCATGCTATGTTTCACCTGGACTCCTTTCATGTAGGGCATTCATTGTACATACCAGCAACTCTTTTCCAAGGTTTTTGCAATCTTAGAAAAGTAAAATCTCCTTATCCTAGTTTTTCGGGATCTGTGGCTAGCAAAGAGTGTGACCATCTTGAAGGTTGCGTCCTAGTTGACAGGCAATGCTTGGTAACCCTGTATGCTGCATCTTGCCGGTTATTATGGACTGTTGTTAAGCATCGCAAGAGCGAGTGTGTGCGGTGCATTGCCCTCCTTCAAAATTCACTTCAAGTGCTGCTCCATTTTCTGGAAAATGGATGTTTTGATTCAGCTGACAGAAATGAAGAGGGAGTAAAATGTGCCAGTTATCTAAGGAGGGTTTATGAAGAGATTAGACAGCAGAAAGATGTTTTTGGTCGGCACTGCTTTATGTTCTTATCAGATTACGTATGGCTTTACTCTGGACATGGTCCACTAAAAAGGGGAATCAAAAGGGAAGTTGATGATGCCCTAAGGCCAGGTGTCTATGCTTTAGTAGATGTTTGCTCACCTGATGACCTACAATATCTTCATACTGTATTTGGAGAGGGTCCTTGCAGAAGCACTTTAGCCAGGCTGCAGCATGACTATAAACTGCATTTCCAGTATGAAGGGAAAGTGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_94847.p1 GENE.S_Transcript_94847~~S_Transcript_94847.p1 ORF type:complete len:1582 (+),score=266.86,Urb2|PF10441.5|87,Urb2|PF10441.5|3.9e-38 S_Transcript_94847:1622-6367(+)
MLERDYVRTEGDFGGSCLNFLKIIYHLLLSCYARFNQLWQAICRLDRSPQMEILNSLAKEFILVVQNFLEIEYEVIGDDLVSIWLMILSFSAMAHSSEDASLFSGAVNLGCQVFDLYSELRQVNRAVFTLCKGLRHLAFYQGDNEIKYSELLTPERNHHFDKFAKSGRSLLCSQKFRLAICNAIKSIPEGQASGCVQTLTDDISDSLAWMKVGCSVTDEHEFGDAASCRFTIQAELLGIVLSEICSMVLDSLSVTPGNCYLMGVSIRNLIMVLHASMIHLVTPEQDGVDEFLLSVTGITIERNKVKCNNDLQDKIPLVMLYFFRLYMSCRSLCRQAVSLMPPDSSRKISGLMADYYTAYSGQDCMERADFEDEGYFSWIGRPSASLLSVVQYIRDNFLQQVSADYCSLIYVFHIMAFQRLVDLNRQIQSVQYIVQRNKNVIHDELMDDGDLVILHDNKRKQERFLSYLKQEAIDLTDFIMEYLSLVDKKQLQLSRETTRSLSPQHTEIDSWDLGICTVNEKTLPTAVWWIICQNIDIWCNYATKKKLKLFLSLLINNSLPYGRCGGVEKQTQNDLGEGIKVTKHQIAQEHLRDTTLYDQRFVCRHMAARICNSLKKCASLLLKGFPTVDAELNSADWEQVLSVTNNSSVAERDGLRTSYCTYSDLINRCSNTKSLSSTISLHIAACRRLLDLLCRMKEKLLSFKSFSRCVMYLVNFERLVINSFVYPHGKSCLHECHQLLGLLVSCRRALKYLLIAFIEENVESSNLSALPIFSGSSSPPLWLLKSVYLVVAWWSPLSSEHSGEVNDMIFSLMDHTSYMFFTLGKHQFSLALKSVLSPKSIKNSSLLCGGDHSNESNSCVKLSKHVGTSKTVTTTVEMLEDQIKSSLSSLSDAFNNGNAELRVQLADLNKLSSVVSCIQGFLWGSESALCDLNASGNDLKAKMRKCKHKTILGIKSFVEIFVEFLSVSSRIFLHNDQPLKISCDSEEQLNLDRNSGVQGTEASLEKGLSYGSESENENQEENSVPGKVGLASSDVQDDSDTGGKKESLQSDNPDSCIGGLTGLGSFKYNCLRIDLLQSFLSGQNLEAAFFLRELLIASSTIVSLSRQIGCSPLPTNLIQIFAGCSEVLLMKFSGMPKPTSVIWLDGTVKFLEALGSQFPSASPATTRDVYSKLVELHLKAIGRCIALQGKGATLASHDVESSAKIYSEGKVSESTVSDALYGLDELKARLRISFKVFIEKSSEIHLLSALQTLERALVGAREGCTKNYEVEMDSAYGGKVSSMVAAGIDCLDLILEFVKGQKRLSIVGGNMSSLFASLLNIIVHLQGPTLFCQKPNSVVVNKNPDSGSVVVMCIEVLTRVAAKHAMFHLDSFHVGHSLYIPATLFQGFCNLRKVKSPYPSFSGSVASKECDHLEGCVLVDRQCLVTLYAASCRLLWTVVKHRKSECVRCIALLQNSLQVLLHFLENGCFDSADRNEEGVKCASYLRRVYEEIRQQKDVFGRHCFMFLSDYVWLYSGHGPLKRGIKREVDDALRPGVYALVDVCSPDDLQYLHTVFGEGPCRSTLARLQHDYKLHFQYEGKV*

Click here to download the sequence:
Link to NCBI Protein BLAST