Transcript Information: S_Transcript_9533.p1


Annotated TAIR IDAT3G01610.1
Annotated Gene Namecell division cycle 48C
Annotated Gene Symbol(s)CDC48C, emb1354
Annotation TypeOrtholog
Chromosome Positionchr3:231787-235057 | Forward length=820
E-Value2.5E-287
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.8023474069395
Replicate 26.2345519821479
Replicate 35.8630379023383
Condition 2: 8 Hour
Replicate 18.3119669932796
Replicate 29.0740872070998
Replicate 38.412100638263
Condition 3: 24 Hour
Replicate 16.8647745926593
Replicate 24.9137131066868
Replicate 35.5605237969866


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_9533.p1 GENE.S_Transcript_9533~~S_Transcript_9533.p1 ORF type:complete len:821 (+),score=170.72,AAA|PF00004.25|5.9e-41,AAA|PF00004.25|1.5e-41,RuvB_N|PF05496.8|1.5e-06,RuvB_N|PF05496.8|0.00018,AAA_2|PF07724.10|1.2e-06,AAA_2|PF07724.10|0.029,AAA_17|PF13207.2|0.00064,AAA_17|PF13207.2|0.00057,AAA_5|PF07728.10|0.00012,AAA_5|PF07728.10|0.017,AAA_16|PF13191.2|0.0019,AAA_16|PF13191.2|0.0062,AAA_16|PF13191.2|1.8e+03,TIP49|PF06068.9|2e-05,TIP49|PF06068.9|0.081,AAA_22|PF13401.2|0.026,AAA_22|PF13401.2|0.03,AAA_22|PF13401.2|1.5e+02,AAA_22|PF13401.2|6.5e+03,RNA_helicase|PF00910.18|4.2e+03,RNA_helicase|PF00910.18|0.003,RNA_helicase|PF00910.18|0.082,AAA_14|PF13173.2|0.0015,AAA_14|PF13173.2|0.093,AAA_33|PF13671.2|0.016,AAA_33|PF13671.2|0.012,IstB_IS21|PF01695.13|0.0061,IstB_IS21|PF01695.13|0.038,AAA_28|PF13521.2|0.0013,AAA_28|PF13521.2|0.96,AAA_28|PF13521.2|4.9e+03,AAA_18|PF13238.2|0.017,AAA_18|PF13238.2|0.15,Bac_DnaA|PF00308.14|0.00063,Bac_DnaA|PF00308.14|4.4,AAA_19|PF13245.2|0.1,AAA_19|PF13245.2|0.068,Viral_helicase1|PF01443.14|7.4e+03,Viral_helicase1|PF01443.14|0.041,Viral_helicase1|PF01443.14|0.13,Cytidylate_kin2|PF13189.2|0.0021,Cytidylate_kin2|PF13189.2|13,TsaE|PF02367.13|0.21,TsaE|PF02367.13|0.099,Mg_chelatase|PF01078.17|0.2,Mg_chelatase|PF01078.17|0.07,AAA_3|PF07726.7|0.024,AAA_3|PF07726.7|1.4 S_Transcript_9533:114-2576(+)
ATGGGCAGAAAAGGAGGAGGAGCTCCGCCGTCAAGACGGCCGTCAACACTATCTCCCGCGATAATCCACCGCCGTATCGATGCCTGTAAAATCAACCACCTCTCTCCCGACTTAATCGCCGAACACCTCTATTCCACTTACCCTGACTACAAACACTACAAACTCATCCCTTTCCGCACCAAAATCACCCAACTCCTCCACTCTCGCCGCCCCGTTTCAAACCCTAACCCTAACCCTAACCAACAACAGGCATCAGATGATTCGGGTTCGGGTTCGGAGCCTAGAAGAAAGAAGCAAAAGAAGCAATCAATTGTGGAGAGAGAGGAGGAAAAGCTTCTAAGGAGAGAGAATGATTACATCAGACGAAAGAGTAGAGAGAACAGGGTTTCTGTCTCCGACGACTCGAACCAGGATTCTGATTCGGATACGGAGCCCTCTGTCTCGACTTCCGAGGACGCAATCTACGACGAGGACGTCGAGCCGGAGTTCGACCTGATGAAATCCATGCTCAGGGCGAACTACGGCGGCTCAAAACCCAGCCCGAGCCCGAAACCGAAGCGGAAGATCAATTTGGAGGTGGAGGAGGAGGTGAGGAGAGAGAAGGAGAAGGCGGTGATGAGCGAAGTGGTGCAAGACGACGAGGAGCGAGAGTCGGTGAAAGGGAATGGGAGAGCAAAAGAAGAGGGAGGAGGAGTGGGGCCTAGGTTTAGGGATTTAGGGGGAATGAAAGGAGTAATAGATGAATTGAAGATGGAAGTGATAGTGCCATTGTATCATCCACAATTGCCTCAATGGTTAGGTGTTAGGCCTATGGCTGGGATTTTGTTACATGGTCCCCCTGGTTGTGGGAAAACTAAGCTGGCTCATGCTATTGCTAATGAGACTGGTGTCCCTTTTTATCAGATTTCCGCCACCGAAGTCGTCTCGGGTGTTTCTGGTGCATCAGAGGAGAATATCCGTGAACTTTTCTCAAAAGCATATAGAACTGCTCCCTCAATTGTATTCATAGATGAAATTGATGCCATTGCTTCTAAAAGAGAAAACCTACAGAGAGAGATGGAGCGGCGAATCGTAACCCAATTGTTGACTTGCATGGATGAATCCCATAGGCTTGTGCAACACAGTGACAAGAATGCTGATTCCGAATCTGCTGGCAAGGGATCAGGATATGTTCTTGTAATAGGAGCGACCAATAGGCCTGATGCTGTTGACCCTGCGTTGAGGAGGCCTGGACGATTTGATCGGGAGATTACTCTTGGAGTTCCAGATGAAAATGCAAGGGTTGAGATACTCTCCGTATTGACACAAAAGCTAAGGCTTGCAGGTGATTTTGATCTGATAAAACTAGCCAGGGCCACTCCTGGCTTTGTTGGTGCTGACTTGACAGCTTTGGCTAATAAGGCTGGTAATCTTGCGATGAAAAGAATCATTGATCAAAGGAGGCTGGAGCTGTCTAAAGAGGACAGGGAACATGCGGAGGAGTGGTGGAAGGAACCTTGGTCTCCTGAAGAGATGGAAAAGCTAAGCATTACAATGACTGATTTTGAGGAGGCTGCAAAAATGGTGCAACCATCTTCAAGACGAGAAGGTTTCTCTGCCATTCCTAATGTCAAGTGGGAGGATGTTGGGGGGCTCAATCGGCTGCGGGAGGAGTTTGAACGCTTTGTTGTTAGACGTATAAAATATCCTGAACATTATGAGGAATTCGGAGTGGACATGGAAACTGGGTTTTTGCTTTATGGACCCCCTGGTTGTGGCAAGACTCTGATAGCGAAGGCTGTTGCTAACGAAGCTGGAGCCAATTTTATACACATCAAGGGTCCTGAACTTTTAAACAAATATGTTGGTGAAAGTGAATTGCATGTACGGACGATATTCAGTCGTGCAAGGACGTGTGCTCCATGCATACTTTTCTTTGATGAGGTCGATGCTTTGACAACTAAGCGTGGAAAAGAAGGGGGTTGGGTTGTTGAACGGCTTTTGAACCAGCTTTTGATTGAGTTAGATGGTGCTGAGCACAGGCGTGGCATCTACGTGATTGGTGCGACAAATAGGCCTGAGGTGATGGATTGTGCAGTTCTGAGGCCAGGGAGATTCGGGAAACTACTATATGTCCCTCTGCCTAGTCCTGACGAGCGTGGCTTGATCTTACAAACGTTAGCTAGAAGAAAACCGATAGATGCAAGTGTGGATCTGCTCACCCTGGGAAGTAGCGCAACATGTGAAAATCTGAGTGGCGCTGACCTTGCTGCACTGATGAATGAAGCGGCAATGGCTGCCTTGGAAGAGAAGTTGACAACTTTTGAAGAGAAGCTGTCATCAAAGCAAAGTGTCTCAGATGCCACTCCATTCACCATCAAGTGTACACATTTTGAGCAAGCCCTGAGGAAAGTTACCCCTTCTGTTTCCGAAAAGCAAAAGCAGTTCTACGAGCGATTTTCATTGAGCTTTCAAGCAGTCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_9533.p1 GENE.S_Transcript_9533~~S_Transcript_9533.p1 ORF type:complete len:821 (+),score=170.72,AAA|PF00004.25|5.9e-41,AAA|PF00004.25|1.5e-41,RuvB_N|PF05496.8|1.5e-06,RuvB_N|PF05496.8|0.00018,AAA_2|PF07724.10|1.2e-06,AAA_2|PF07724.10|0.029,AAA_17|PF13207.2|0.00064,AAA_17|PF13207.2|0.00057,AAA_5|PF07728.10|0.00012,AAA_5|PF07728.10|0.017,AAA_16|PF13191.2|0.0019,AAA_16|PF13191.2|0.0062,AAA_16|PF13191.2|1.8e+03,TIP49|PF06068.9|2e-05,TIP49|PF06068.9|0.081,AAA_22|PF13401.2|0.026,AAA_22|PF13401.2|0.03,AAA_22|PF13401.2|1.5e+02,AAA_22|PF13401.2|6.5e+03,RNA_helicase|PF00910.18|4.2e+03,RNA_helicase|PF00910.18|0.003,RNA_helicase|PF00910.18|0.082,AAA_14|PF13173.2|0.0015,AAA_14|PF13173.2|0.093,AAA_33|PF13671.2|0.016,AAA_33|PF13671.2|0.012,IstB_IS21|PF01695.13|0.0061,IstB_IS21|PF01695.13|0.038,AAA_28|PF13521.2|0.0013,AAA_28|PF13521.2|0.96,AAA_28|PF13521.2|4.9e+03,AAA_18|PF13238.2|0.017,AAA_18|PF13238.2|0.15,Bac_DnaA|PF00308.14|0.00063,Bac_DnaA|PF00308.14|4.4,AAA_19|PF13245.2|0.1,AAA_19|PF13245.2|0.068,Viral_helicase1|PF01443.14|7.4e+03,Viral_helicase1|PF01443.14|0.041,Viral_helicase1|PF01443.14|0.13,Cytidylate_kin2|PF13189.2|0.0021,Cytidylate_kin2|PF13189.2|13,TsaE|PF02367.13|0.21,TsaE|PF02367.13|0.099,Mg_chelatase|PF01078.17|0.2,Mg_chelatase|PF01078.17|0.07,AAA_3|PF07726.7|0.024,AAA_3|PF07726.7|1.4 S_Transcript_9533:114-2576(+)
MGRKGGGAPPSRRPSTLSPAIIHRRIDACKINHLSPDLIAEHLYSTYPDYKHYKLIPFRTKITQLLHSRRPVSNPNPNPNQQQASDDSGSGSEPRRKKQKKQSIVEREEEKLLRRENDYIRRKSRENRVSVSDDSNQDSDSDTEPSVSTSEDAIYDEDVEPEFDLMKSMLRANYGGSKPSPSPKPKRKINLEVEEEVRREKEKAVMSEVVQDDEERESVKGNGRAKEEGGGVGPRFRDLGGMKGVIDELKMEVIVPLYHPQLPQWLGVRPMAGILLHGPPGCGKTKLAHAIANETGVPFYQISATEVVSGVSGASEENIRELFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLLTCMDESHRLVQHSDKNADSESAGKGSGYVLVIGATNRPDAVDPALRRPGRFDREITLGVPDENARVEILSVLTQKLRLAGDFDLIKLARATPGFVGADLTALANKAGNLAMKRIIDQRRLELSKEDREHAEEWWKEPWSPEEMEKLSITMTDFEEAAKMVQPSSRREGFSAIPNVKWEDVGGLNRLREEFERFVVRRIKYPEHYEEFGVDMETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELHVRTIFSRARTCAPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAEHRRGIYVIGATNRPEVMDCAVLRPGRFGKLLYVPLPSPDERGLILQTLARRKPIDASVDLLTLGSSATCENLSGADLAALMNEAAMAALEEKLTTFEEKLSSKQSVSDATPFTIKCTHFEQALRKVTPSVSEKQKQFYERFSLSFQAV*

Click here to download the sequence:
Link to NCBI Protein BLAST