Transcript Information: S_Transcript_95675.p2


Annotated TAIR IDAT5G48050.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:19472661-19473770 | Reverse length=369
E-Value2E-13
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.2454360183952
Replicate 22.7986050793399
Replicate 32.1122838125306
Condition 2: 8 Hour
Replicate 11.8383957169942
Replicate 21.5979891885519
Replicate 32.3100918586679
Condition 3: 24 Hour
Replicate 12.0176924406337
Replicate 22.3724433300364
Replicate 31.8326362314062


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_95675.p2 GENE.S_Transcript_95675~~S_Transcript_95675.p2 ORF type:complete len:812 (+),score=122.98,rve|PF00665.22|1.1e-24,UBN2_3|PF14244.2|1.4e-19,UBN2|PF14223.2|7.9e-16,gag_pre-integrs|PF13976.2|2.4e-12,DUF4219|PF13961.2|2.8e-10,DUF4219|PF13961.2|1.2e+03,DUF4219|PF13961.2|4.9e+03,DUF4219|PF13961.2|4.6e+03,UBN2_2|PF14227.2|4e-08,Retrotrans_gag|PF03732.13|7e-08,Retrotrans_gag|PF03732.13|1.4e+04,zf-CCHC|PF00098.19|4.9e-06 S_Transcript_95675:8536-10971(+)
ATGGCGGATGTTGGTACTTCAACGAGCGGAATGATAAAGCTCAATGAAACCAACTACAACAATTGGAGTTTTCGCATGAAATACTATTTACTCGGCCAGGAATTGTGGGAGATCGTTGGTGGAAGTGATACAGTAGCACCACCCAAGGAAAAGGCCGAAGATTATAAGAAGTGGAAAACAAAGGCTGGAAAAGCCATGTATGCTCTCACTATCTCTATAGAAGATGATTTGTTGTCTAAGATCAAAGAAACCAAGACACCCAAGGAGGCTTGGGATACGTTATCGGCATTGTTCGAAAAGACGAACGATGCACAATTACAACGACTCGAGAATGAGCTCTTATCCGTCAAGCAAGAAGGCATGACGGTGTCCCAATACTTTACTAAAGTAAAAACTTTATGTAAAGAAATCTCGAAGTTAGATAAAGAAAATCCCATCACCGACACCAGAGTACGAAGAATTATTGTTCACGGGCTACGACCAGAGTTCAATAGTCTGGTTACGGCTACACGTGGATGGGCCGCTCAACCAACCTTGGATGAGCTGGAAAACATTCTAGCCAATCAAGAATCTCTAGACAAGCAGATGTCTGGAGTCTCGGTGAAAGAGGAGGATAAGGCTCTTTTCAGTAGAGCACCAAAGGGACAGGAAAATAGTTCAAGATCCTATGGAGAACGGAAGCCGAGAGGAAGGCAAGGTCGCTGGAACAAGAAGCAGGCGGAGAGAAGTTCTCAGCAAGGGGGAGCTCATTATGAACAAGGCAAGGGCTACTATGACAGGCAACGAGGTCCAAAGCCCAAAGTTGTATGCTATAAGTGCGGTAAGAGAGGTCACTATGCCCGTGATTGTTGGAGCAAACCCACAGAGGGTAATGTGGCCACATCATCCCAACAAGGGGGAGAAGAAGTATGGGATTTCCATGCTAACACCGCTATAGTAGAGCCATGTTCAAGTTTCGATATGGAGGGATCATTGGTTGAAGAAAACTTAGCACTTGCTGTCACCAAGGAGAAGGGAATCAATTATCAATCTGATTGGATTGTTGATTCCGGGTGTTCCAACCATATGACTGGTGATATGGCAAAACTCCAAAGTACAACAGAGTACAAAGGAGAGAGTCATGTTGTTACCGCAAGTAACACTCGATTGCCAATCACTCATGTTGGAAAAACAATGGTCGCGCCCCGATTCAATTCTCAACAAGTGAAGTTGGAGAATGTCTACCATGTGGAAGGGATGAAGAAGAATCTCTTGTCAGTCTCACAACTTACATCTTCTGGCAACTATGTGGTCTTTGGCCCAGATGATGTTAAGGTGTATCGGAAGTTAAGGCCGATTGGAGTACCACTCATGAAAGGGCAACGATTAGATTCTATCTATGTGATGTCAGCACAGGAGGCCTACGTAGATAAGACAAGGAGGAATGAGACGGCAGATTTATGGCATGCAAGGCTAGGGCATGTCAGCTATCACATGATACATACCATGATGAAAAAGTCATCGCTCAATGGTCTACCTCAGATGGACATACGAAGTGATGTAGTATGCGCTGGCTGTCAATATGGCAAAGCACATCAATTGCCATATAAGGAGTCGAAGTACCGAGCCAAGAGACCACTAGAGCTGGTACATTCAGATGTCTTTGGTCCTGTGAAGCAGACATCAATAAGTGGGTATCAATACATGATTACCTTTATTGATGATTATTCAAGATATGTCTGGGTGTACTTCATGAAAGAGAAGTCAGAAGCCTTATCCAAATTCATGGCATTCAAAGATGAAGCTGAAAAGGAAGTTGGTTCCAAGATACACTGCTTGCGCACCGACAATGGAGGAGAGTACACATCTCGTGACTTTGGAAAGTACTTGCAGCAGAATCGGATCAGGAGACAGTTAACCTGTCCAAATACTCCACAACAAAATGGAGTAGCTGAGAGGAAGAATCGACATCTTGCTGAGACATGTCGAAGTATGTTACACACCAAAAATGTGCCACCACGTTTTTGGGCTGAGTGTATGCTTACAGCGGTACATGTGACAAATCGCTTACCTCAAGCAAAGCTTGGATTTATGTCACCATTTGAGAAGCTGTGGAATCTCAAACCCACTGTAAATCATTTCAAAGTGTTCGGGTGTGTTTGTTATGTGTTCGTGCCTGACCATCTCCGCACCAAATTCGACAAGAAGGCAATTCGTTGTATCTTTGTCGGATATGACACACAGAGGAAAGGATGGAAGTGCTGCAATCCGTCCACTGGTCGTTGTTTTGTTTCAAGAAATGTGATATTTGATGAGGCATCATCTTGGTGGTCACCACAAGCAGTAGCACTGCCAAATACAAAGGAGATGGAAGAGCAACTTGAAGAAATGGAAGCCCAACAAGAGTCAGAGGCATCCGATGATGAAAGTGACAAGGCATCAGACAAGGTGGTCTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_95675.p2 GENE.S_Transcript_95675~~S_Transcript_95675.p2 ORF type:complete len:812 (+),score=122.98,rve|PF00665.22|1.1e-24,UBN2_3|PF14244.2|1.4e-19,UBN2|PF14223.2|7.9e-16,gag_pre-integrs|PF13976.2|2.4e-12,DUF4219|PF13961.2|2.8e-10,DUF4219|PF13961.2|1.2e+03,DUF4219|PF13961.2|4.9e+03,DUF4219|PF13961.2|4.6e+03,UBN2_2|PF14227.2|4e-08,Retrotrans_gag|PF03732.13|7e-08,Retrotrans_gag|PF03732.13|1.4e+04,zf-CCHC|PF00098.19|4.9e-06 S_Transcript_95675:8536-10971(+)
MADVGTSTSGMIKLNETNYNNWSFRMKYYLLGQELWEIVGGSDTVAPPKEKAEDYKKWKTKAGKAMYALTISIEDDLLSKIKETKTPKEAWDTLSALFEKTNDAQLQRLENELLSVKQEGMTVSQYFTKVKTLCKEISKLDKENPITDTRVRRIIVHGLRPEFNSLVTATRGWAAQPTLDELENILANQESLDKQMSGVSVKEEDKALFSRAPKGQENSSRSYGERKPRGRQGRWNKKQAERSSQQGGAHYEQGKGYYDRQRGPKPKVVCYKCGKRGHYARDCWSKPTEGNVATSSQQGGEEVWDFHANTAIVEPCSSFDMEGSLVEENLALAVTKEKGINYQSDWIVDSGCSNHMTGDMAKLQSTTEYKGESHVVTASNTRLPITHVGKTMVAPRFNSQQVKLENVYHVEGMKKNLLSVSQLTSSGNYVVFGPDDVKVYRKLRPIGVPLMKGQRLDSIYVMSAQEAYVDKTRRNETADLWHARLGHVSYHMIHTMMKKSSLNGLPQMDIRSDVVCAGCQYGKAHQLPYKESKYRAKRPLELVHSDVFGPVKQTSISGYQYMITFIDDYSRYVWVYFMKEKSEALSKFMAFKDEAEKEVGSKIHCLRTDNGGEYTSRDFGKYLQQNRIRRQLTCPNTPQQNGVAERKNRHLAETCRSMLHTKNVPPRFWAECMLTAVHVTNRLPQAKLGFMSPFEKLWNLKPTVNHFKVFGCVCYVFVPDHLRTKFDKKAIRCIFVGYDTQRKGWKCCNPSTGRCFVSRNVIFDEASSWWSPQAVALPNTKEMEEQLEEMEAQQESEASDDESDKASDKVV*

Click here to download the sequence:
Link to NCBI Protein BLAST