Transcript Information: S_Transcript_95972.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value3E-22
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.85848391081227
Replicate 20.59308574079341
Replicate 30.44619522782905
Condition 2: 8 Hour
Replicate 10.85989477085214
Replicate 20.66153315870159
Replicate 31.3179153089101
Condition 3: 24 Hour
Replicate 11.4680701270561
Replicate 20.79201492067881
Replicate 30.27120477854963


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_95972.p1 GENE.S_Transcript_95972~~S_Transcript_95972.p1 ORF type:complete len:372 (+),score=76.41,UBN2_3|PF14244.2|3.2e-40,Retrotrans_gag|PF03732.13|1.1e-11,Retrotrans_gag|PF03732.13|2.6e+03,UBN2|PF14223.2|0.0031,UBN2|PF14223.2|2.5,UBN2|PF14223.2|7.4e+03 S_Transcript_95972:561-1676(+)
ATGGCACCTAGAGGTCAAATTACATATGATATTCAAAATCCATTGTTTCTACATCCTAGCGATGGTCCTGGTTCTCTCAATATTGAGGAAAAGCTTCAAGGAGCCTCCAATTATCGCTCATGGAGAAGGAGTGTGGAGATTGCGTTGGCTACCAAAAGAAAGCTTGGATTCATTACAGGAACTCTTGAACGTTCTGAAGATGACAATGATAAAGCTGAGCAGTTTGACACCTGCAACAGTATGGTAATTGCTTGGCTCTTGAATTCTGTTTCAGACTCAATTCGTAAATCTGTTCTGTTTGTGGATTCTGTTAGAGAAATATGGCAGCAACTAGAAACCAGATTCTCTGTTAGTAATGGTTCTAGAAAGTACAAATTGAATAGGAACATTCATGAACTGAGACAGAATGGAGCTAGCATTACTGATTTTTACACAAAGATGCGTTGTTACTGGGAGGAATTGGATGCTATGAATGAGTTACCTAAGATCACTCAGTTGAATGCTGAGATTATTACCTTTCTTAAGGCATTGAACAAACAGAGAGAAGAACAAAAATTGTTTCAATTTCTCAATGGTCTTGACAACATCTATAACACTCATCGAAGTAATATCTTGATGAGAAATCCTCTTCCTAATGTGGATATTGCCTGCTCTATACTGCAACAAGAAGAATGTCAACAAGATATTCTTGAAATTTCTTCTGTGACAATAGAACCTACTGCACTGTATAGTAAAGGTGAAGGAGTTAAATGTAGCAGTTGTGGTAGAACTGGACATTCCAAGGATAGATGCTGGACAGAGATTGGCTATCCTTCTTGGCATCCAAAGTCCAAGAAATTTCCTCAGAAAGCTAAAGGACACCAGAAACCATATCAGAAGCACAAAACAGCTGCTAATGCTAGTACTGTTGCTGATAAGAAAGACAATCAGTTGATGTTTACACAAGCACAATTTGAACAATTCATCAAACAGTTCAATGGCTCTACTAGTTCAGCATCCATGAAGAGTTCTTGTGATACTGATGATGAACTTGAGGCAAATTTTGCAGGTATGATTTATTGTCAGTCTGTTATACAATCTGTTAGACAATCAACCTCTCTTCTCTTCAACACATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_95972.p1 GENE.S_Transcript_95972~~S_Transcript_95972.p1 ORF type:complete len:372 (+),score=76.41,UBN2_3|PF14244.2|3.2e-40,Retrotrans_gag|PF03732.13|1.1e-11,Retrotrans_gag|PF03732.13|2.6e+03,UBN2|PF14223.2|0.0031,UBN2|PF14223.2|2.5,UBN2|PF14223.2|7.4e+03 S_Transcript_95972:561-1676(+)
MAPRGQITYDIQNPLFLHPSDGPGSLNIEEKLQGASNYRSWRRSVEIALATKRKLGFITGTLERSEDDNDKAEQFDTCNSMVIAWLLNSVSDSIRKSVLFVDSVREIWQQLETRFSVSNGSRKYKLNRNIHELRQNGASITDFYTKMRCYWEELDAMNELPKITQLNAEIITFLKALNKQREEQKLFQFLNGLDNIYNTHRSNILMRNPLPNVDIACSILQQEECQQDILEISSVTIEPTALYSKGEGVKCSSCGRTGHSKDRCWTEIGYPSWHPKSKKFPQKAKGHQKPYQKHKTAANASTVADKKDNQLMFTQAQFEQFIKQFNGSTSSASMKSSCDTDDELEANFAGMIYCQSVIQSVRQSTSLLFNT*

Click here to download the sequence:
Link to NCBI Protein BLAST