Transcript Information: S_Transcript_96120.p1


Annotated TAIR IDAT5G41980.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:16793765-16794889 | Forward length=374
E-Value5E-15
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.1609698525414
Replicate 21.850905164221
Replicate 30.61888376119465
Condition 2: 8 Hour
Replicate 10.5009319873152
Replicate 21.4263930340765
Replicate 30.50070782964721
Condition 3: 24 Hour
Replicate 12.272454322847
Replicate 21.4450081206396
Replicate 30.84637732903074


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_96120.p1 GENE.S_Transcript_96120~~S_Transcript_96120.p1 ORF type:complete len:298 (+),score=40.09 S_Transcript_96120:678-1571(+)
ATGGCTCGCTTACCATTGAGTAAACGAAAGAAGATTCTCGCAACATGTATAGTGATCTATAGGCAGATGATGATCATGGGAATAGAGACTATAGTTGAGCTCATATATCTCTTATCCATTATGAATGTTAAAGTCCCAACACCTATAGCCTATGTTTTTGATAATTCTACAGAAGAAAGATATTATGCTAGGCTTTTAAATCTCAGGCCAATGATCCAAGAAAGTGATATAGCGTGCTTGGATAATCTTAGGATGGATAGAGCATGCTTTCATAAATTGTGTGAGATGCTTAGGGATGTTGGTAGGCTACAAGAAACCAGGAATACAAGTTTACAGGAAATGGTTGCATTATTTCTATTCACACTTTCCCATGATACAAAAAACCGAAGAACACAACTGCATTTTAGAAGAAGTGGAGAGACAATATCTAGACACTTCAATTCGGTTCTACGTGCTGTTCTTAGATGTCACCATGTTTTATTAGGACAAAAAAAGGCAAAAACTGAAACTATTGAAGCTAATCTAATGGGGCCTCAACCTTCAGTTACATCTTCAGCTACACCATCAACTATCAGGACAAAAAAGGCAAAAACTGAAACTATTGAAGCTCTAAAAGAATTTTCAGCCAAGCTGGGAAAAATGACTGAGATGATGGAAGTTGCTGGTGAACATATTGGGCGTTTAGCTAATTGTTTCAAACATGAGTCTGATTCTGCTGAAAGAAGAATGCAAATTACCGCTGAGGTAATGAAGATTGAAGGACTAACTCCTACCCAAGTTTTATCAGTATCAAAGAAGATTGCCTTGAACCCTCTTGAAGTTGATTTCTTCTTCAGCCTTCCAGATGATTACAAATATGCTTACATACAAGGTTTATTGATTCCTGATCAATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_96120.p1 GENE.S_Transcript_96120~~S_Transcript_96120.p1 ORF type:complete len:298 (+),score=40.09 S_Transcript_96120:678-1571(+)
MARLPLSKRKKILATCIVIYRQMMIMGIETIVELIYLLSIMNVKVPTPIAYVFDNSTEERYYARLLNLRPMIQESDIACLDNLRMDRACFHKLCEMLRDVGRLQETRNTSLQEMVALFLFTLSHDTKNRRTQLHFRRSGETISRHFNSVLRAVLRCHHVLLGQKKAKTETIEANLMGPQPSVTSSATPSTIRTKKAKTETIEALKEFSAKLGKMTEMMEVAGEHIGRLANCFKHESDSAERRMQITAEVMKIEGLTPTQVLSVSKKIALNPLEVDFFFSLPDDYKYAYIQGLLIPDQ*

Click here to download the sequence:
Link to NCBI Protein BLAST