Transcript Information: S_Transcript_96121.p1


Annotated TAIR IDAT5G41980.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:16793765-16794889 | Forward length=374
E-Value8E-47
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.0327433315145
Replicate 20.9220270262842
Replicate 30.44042354826509
Condition 2: 8 Hour
Replicate 11.2731576308736
Replicate 20.60103473957474
Replicate 30.50903516668612
Condition 3: 24 Hour
Replicate 10.91292050408453
Replicate 21.3530633776924
Replicate 31.355214326245


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_96121.p1 GENE.S_Transcript_96121~~S_Transcript_96121.p1 ORF type:complete len:335 (+),score=27.49,DDE_Tnp_4|PF13359.2|9e-29 S_Transcript_96121:767-1771(+)
ATGGCTCGCTTACCATTGAGTAAACGAAAGAAGATTCTCGCAACATGTATAGTGATCTATAGGCAGATGATGATCATGGGAATAGAGACTATAGTTGAGCTCATATATCTCTTATCCATTATGAATGTTAAAGTCCCAACACCTATAGCCTATGTTTTTGATAATTCTACAGAAGAAAGATATTATGCTAGGCTTTTAAATCTCAGGCCAATGATCCAAGAAAGTGATATAGCGTGCTTGGATAATCTTAGGATGGATAGAGCATGCTTTCATAAATTGTGTGAGATGCTTAGGGATGTTGGTAGGCTACAAGAAACCAGGAATACAAGTTTACAGGAAATGGTTGCATTATTTCTATTCACACTTTCCCATGATACAAAAAACCGAAGAACACAACTGCATTTTAGAAGAAGTGGAGAGACAATATCTAGACACTTCAATTCGGTTCTACGTGCTGTTCTTAGATGTCACCATGTTTTATTAAGCAAACCTGAACCAGTGACGGAAAATTGTCAAGATGAGAGATGGAAGTGGTTTAAGAATTGCATAGGCGCTTTGGATGGAACACATATTAAGGTTCGCGTCGGGGAAAATGACAAAGTTAGATTCAGAAATAGAAAAAGTGAACTTACTACCAATGTTTTAGGCGTGTGCACAAGAGAGATGCAATTTATCTATGTGCTGCCTGGATGGGAGGATTCAGCACATGATAATAGAGTTCTTCGTGATGCACTTTCTAGAAAAAATCCCTTAAAAGTCCCTCAAGGGAATTACTATTTATGTGATGCTGGATATATGAACTGTGATGGATTTCTAACACCATTTAGAGGCCAAAGATATCATTTGAGTGTGTGGAAGAGGGGTGCTCAACCAACATCAGCTGAGGAATATTTTAACATGAAACATTCCCAAGCAAGGAATGTTATTGAAAGATGTTTTGGATTGCTTAAAATGAGATGGGGTATACTAAGGAACACTACTTGGTACTCTAGAAAGACTGGGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_96121.p1 GENE.S_Transcript_96121~~S_Transcript_96121.p1 ORF type:complete len:335 (+),score=27.49,DDE_Tnp_4|PF13359.2|9e-29 S_Transcript_96121:767-1771(+)
MARLPLSKRKKILATCIVIYRQMMIMGIETIVELIYLLSIMNVKVPTPIAYVFDNSTEERYYARLLNLRPMIQESDIACLDNLRMDRACFHKLCEMLRDVGRLQETRNTSLQEMVALFLFTLSHDTKNRRTQLHFRRSGETISRHFNSVLRAVLRCHHVLLSKPEPVTENCQDERWKWFKNCIGALDGTHIKVRVGENDKVRFRNRKSELTTNVLGVCTREMQFIYVLPGWEDSAHDNRVLRDALSRKNPLKVPQGNYYLCDAGYMNCDGFLTPFRGQRYHLSVWKRGAQPTSAEEYFNMKHSQARNVIERCFGLLKMRWGILRNTTWYSRKTG*

Click here to download the sequence:
Link to NCBI Protein BLAST