Transcript Information: S_Transcript_96656.p1


Annotated TAIR IDAT5G60040.2
Annotated Gene Namenuclear RNA polymerase C1
Annotated Gene Symbol(s)NRPC1
Annotation TypeOrtholog
Chromosome Positionchr5:24173590-24183269 | Forward length=1391
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 114.369445933197
Replicate 216.171763647557
Replicate 317.665194695461
Condition 2: 8 Hour
Replicate 119.148686275887
Replicate 219.873217615615
Replicate 318.020720275513
Condition 3: 24 Hour
Replicate 118.17714047849
Replicate 215.556225697375
Replicate 317.368138565949


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_96656.p1 GENE.S_Transcript_96656~~S_Transcript_96656.p1 ORF type:complete len:1352 (+),score=278.86,RNA_pol_Rpb1_5|PF04998.13|1.3e-84,RNA_pol_Rpb1_2|PF00623.16|1.1e-73,RNA_pol_Rpb1_1|PF04997.8|6.3e-73,RNA_pol_Rpb1_3|PF04983.14|7.7e-31,RNA_pol_Rpb1_3|PF04983.14|2.2e+03,RNA_pol_Rpb1_4|PF05000.13|1.4e-29 S_Transcript_96656:268-4323(+)
ATGATGAAACCTCGTGAACAAATACAGTTCACCAAAAGGCCTTATATCGAGGACGATGAACCTCGACGAATTAAAGGCATCCAGTTTTCGAGGTTTTCAGAGTCGGACATTAGTAAAATTGCTGAAGTTGAAGTGTTTAGAGCTTCTTACTATGACACTCAGAAAAAACCTATTGCCAATGGTTTATTGGACCCCAAAATGGGACCCCCAAACAAAAGCAGTGGTTGTTGTGCAACATGTAATGCAAGTTTTCACGACTGTCCTGGTCATTATGGCTATGTGACTCTTGCACTGCCTGTTTTCAATATCGGCTATGCTAATTCCATTCTAGATGTTCTGAAGTGTATTTGCAAGTCTTGCTCTCATGTTTTGCTGCCGGAAAAAGAATGTAAGGATTATTTGAAGAAGATGAGAAGCAAGGGCGATGCTCTGTTCAAAACTGAACTGAAGAAAAGGATTGTTAAGAGGTGTACCTCCAGAGCAGAAGTGAAGTGCTTCAGATGTGGATATGTAAATGGAAAAGTGAAGAAGGGTAAAACTGTTTTGTCAGTAGTTCACAATTGTCCAAACCAGGACAAAGATGATGAAGAAAGAAGAACACCAACACTCTCTTCTATAAGTCCACTGGATGCACTCTTTTTATTTAAACAAATGCAAGATCAGGATTGTGAGGTACTCTATTTGAATGATAGACCTGAGAAGCTTATAATGAACAACTTACCAGTTCCTCCAATGGCCATTCGCCCATCTGTTTTTGTGGATGGAGGAATGCAGAGCAATGAGAATGACATTACAGAAAGGTTAAAGAGAGTTCTTCAAGCAAACGCTTGTGTTCGGCAGGGCTTGCAAGAACCGAGTAACTCATCGAAGATTTCGGATGATTGGGATTATCTTCAAGTTGAAGTTGCTCAACTTATAAACAGTGATGCACGTGTTGCTTTAGTAGGCCAGCAGCCTACGAAGCCATTGAGTGGGTTTGTTCAACGTCTAAAAGGAAAGCAGGGTCGATTCCGTGGGAACCTGTCTGGAAAGCGTGTTGAGTTCACTGGAAGGACTGTTATATCGCCTGATCCTAATCTGAAAATCACAGAGGTTGCAGTTCCACAGTTGATGGCGTCAATCTTAACTTATCCTGAACGTGTCAACCATCACAACATCGAAAAGCTGAGGCAATGTGTGCGTAATGGGCCAAAGAAGTATCCCGGTGCAAAGCTGGTAGTGAAACCCAATGGTGATCAAATAGATTTAACATTTGCAGGTAGAAAACGGACTGCTGATGAACTAAAGTTTGACTGCATAGTTTATCGTCATCTTGAGGATGGTGATGTTATTCTTTTCAACAGGCAACCGAGCTTGCATCGGATGTCTATCATGTGCCATAGGGCTAGAATAATGCCATGGAGAACTTTGAGATTCAATGAGTCTGTTTGCAACCCTTACAATGCTGATTTTGATGGTGATGAGATGAATATGCATGTCCCACAGACAGAGGAGGCACGAGCAGAGGCTTTAATGTTAATGGGGGTGCAGAACAACCTTTGTACACCCAAAAATGGAGCCATTTTGGTTGCTTCCACACAAGATTTCTTGACATCTTCTTATCTAATTACAAGGAAGGACACATTTTATGATCGTGCAACATTCTCACTATTGTGTTCTTATATGGGAGATGGAATGGATATGATTGATTTACCAGCACCAGCTTTGATTAAGCCAATTGAGCTCTGGACGGGTAAACAGCTGTTTAATGTTCTGTTGCGTCCACATGCAAAAATGAGAGTGTTTGTAAATCTTATGGTCAAGGAAAAGATTTATTCCAGACCTGAAGACAGAAAGACAACATGTAGGGAAGAAACCATGTGTCCAAATGATGGTTTTGTTTATTTCCGCAACAGTGAGTTGATATGTGGGCAACTTGGAAAGAGTACTTTAGGGAATGGAAATAAGGTTGGTCTTTTCTCTGTTCTTCTTCGAGATTATAATGCGCATGCTGCTGCTGCTTGCATGAACCGGGTGGCAAAGTTAAGTGCTAGATGGATCGGTAATCATGGGTTTTCAATTGGTATTGATGATGTTCAACCTGGGAAACTACTGAATGAACAGAAAAGACTCAGAATATTGGAAGGATACCAAGAGTGTGATAGGTCAATACAGTCCTACAACGAGGGCAAGCTCACCCTTATGCCTGGTTGTGATGCAGCCCAAACACTGGAGGCGAAGATAACCGAAAAATTAAATGAAATTCGTGAAATAGCTGGAAAGGTTTGTATGAAAGAACTTCACTGGAGGAATAGCCCGTTAATAATGTCACAGTGTGGTTCCAAAGGATCACCAATCAACATCAGCCAAATGGTTGCTTGTGTGGGTCAGCAAGCAGTTGGAGGGCGCCGAGCTCCAGATGGTTTCATTGATCGCAGTCTACCCCATTTTCCTAGAAAATCAAAAACTCCTGCTGCAAAGGGATTTGTTCCTAATTCCTTCTATAGCGGCTTGACAGCCACTGAATTTTTTTTTCATACAATGGGCGGGCGAGAAGGTCTTGTGGATACAGCTGTGAAAACTGCAGAGACTGGGTATATGTCGCGTAGACTGATGAAATTTTTGGAGGACCTAGCCATTTACTATGACATGACTGTACGAACTTCAAGTGGAATTATTGTTCAATTTCGATATGGTGATGATGGGATGGATCCTGCTCAAATGGAAGGATCGCAAGGATTTCCTGTGGACCTTGAGAGGTTGCTTTTCAAAGTAGAGGCTACTTGTCCTGCTGGAGGAAATGTAAAGCTATTGCCTTCAGAAACATCTAATCTGATAAATAAGAGGCTGTCGGAATACAATTTGAATTCTGATGGTGGTTGTGCTGATGCCTTCAAGGAAAAGTTGTTCGAGTTCTTTGACAAACTAGCTAAAAGAAAATATCATGTAACTGCACAACAGCTAAAGGTATTTTTGGATGCTTGCATTTCTCGTCTTCGTTCAAAAGGGATTGAAGCTGGAACGGCAATTGGAGCAATTGGAGCTCAAAGTATTGGGGAACCAGGCACACAAATGACTTTGAAAACTTTCCATTTCGCTGGAGTTGCCAGCATGAATGTTACCCTTGGAGTTCCTCGTATTAAAGAAATTATAGATGCACGCAAAAACATAAGTACTCCAATTATTATGGCAAAACTTGAGAATGATAACAATATGGCGATCGCACAGAAGGTAAAAGGTCGAATTGAGAAGACAATGTTGGGCCAGGTGGCAAAGAGTATCAAGCTTGAAATGACAATGGTTAAAATATCGGTGGTTGTTAAGCTTGATCTAGCTAAAATCAATGCTTTACGGCTTTTTATAGATGCTTACACAGTTCAGCCCAAAATTGAAAAGGCATTGAAAAAGTTCAAGGAAAGTAAAGCGAATGTTAAAGCTCTTGATACTAGGAAGCTGGTTATCACTACAAATGCCAATAGAAATATTGGTCATTTTGTAATTCACCGACTTAAAAATATATTGGCCACAGTTGCTATTAAGGGTATAGATACTGTTGAAAGGGCAATTATTGCGGATGAGGAAGGGAAAAAGGGAAAGCTTAACCTGATTGTCGAGGGAACTGGTTTTCTGGAGGTCATGGGGATTCAGGGAATCAATGGACAGGAGACAGAGAGCAATCATGTTATTGAAGTGTACAAAACACTTGGGATAGAAGCTGCACGGATCTGTATAATCAAGGAGATTAAAAAGGTCATGCAAAGTCATTCCATGGATATAGACATACGACATATGATGCTTCTTGCAGATTTGATGACATATAAGGGGGATGTTCTGCCTGTTACAAGAGTTGGAATGTCAAAAATGAAGGAAAGTATTTTGATGTTGGCATCTTTTGAGAAAACTGCTGATCATCTTTTTAATGCTGCTGTAAGTGGGAGGGAAGACCTTATTGGAGGAGTTACTGAGTGCATCATTATGGGCATACCTATGCAGATTGGCACGGGTATGCTTAAAATTTTGCAGAGAACTGATCCACTGCCGGTGTATAGAAATGCATCAAATCCTATTATCTCTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_96656.p1 GENE.S_Transcript_96656~~S_Transcript_96656.p1 ORF type:complete len:1352 (+),score=278.86,RNA_pol_Rpb1_5|PF04998.13|1.3e-84,RNA_pol_Rpb1_2|PF00623.16|1.1e-73,RNA_pol_Rpb1_1|PF04997.8|6.3e-73,RNA_pol_Rpb1_3|PF04983.14|7.7e-31,RNA_pol_Rpb1_3|PF04983.14|2.2e+03,RNA_pol_Rpb1_4|PF05000.13|1.4e-29 S_Transcript_96656:268-4323(+)
MMKPREQIQFTKRPYIEDDEPRRIKGIQFSRFSESDISKIAEVEVFRASYYDTQKKPIANGLLDPKMGPPNKSSGCCATCNASFHDCPGHYGYVTLALPVFNIGYANSILDVLKCICKSCSHVLLPEKECKDYLKKMRSKGDALFKTELKKRIVKRCTSRAEVKCFRCGYVNGKVKKGKTVLSVVHNCPNQDKDDEERRTPTLSSISPLDALFLFKQMQDQDCEVLYLNDRPEKLIMNNLPVPPMAIRPSVFVDGGMQSNENDITERLKRVLQANACVRQGLQEPSNSSKISDDWDYLQVEVAQLINSDARVALVGQQPTKPLSGFVQRLKGKQGRFRGNLSGKRVEFTGRTVISPDPNLKITEVAVPQLMASILTYPERVNHHNIEKLRQCVRNGPKKYPGAKLVVKPNGDQIDLTFAGRKRTADELKFDCIVYRHLEDGDVILFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARAEALMLMGVQNNLCTPKNGAILVASTQDFLTSSYLITRKDTFYDRATFSLLCSYMGDGMDMIDLPAPALIKPIELWTGKQLFNVLLRPHAKMRVFVNLMVKEKIYSRPEDRKTTCREETMCPNDGFVYFRNSELICGQLGKSTLGNGNKVGLFSVLLRDYNAHAAAACMNRVAKLSARWIGNHGFSIGIDDVQPGKLLNEQKRLRILEGYQECDRSIQSYNEGKLTLMPGCDAAQTLEAKITEKLNEIREIAGKVCMKELHWRNSPLIMSQCGSKGSPINISQMVACVGQQAVGGRRAPDGFIDRSLPHFPRKSKTPAAKGFVPNSFYSGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKFLEDLAIYYDMTVRTSSGIIVQFRYGDDGMDPAQMEGSQGFPVDLERLLFKVEATCPAGGNVKLLPSETSNLINKRLSEYNLNSDGGCADAFKEKLFEFFDKLAKRKYHVTAQQLKVFLDACISRLRSKGIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIIDARKNISTPIIMAKLENDNNMAIAQKVKGRIEKTMLGQVAKSIKLEMTMVKISVVVKLDLAKINALRLFIDAYTVQPKIEKALKKFKESKANVKALDTRKLVITTNANRNIGHFVIHRLKNILATVAIKGIDTVERAIIADEEGKKGKLNLIVEGTGFLEVMGIQGINGQETESNHVIEVYKTLGIEAARICIIKEIKKVMQSHSMDIDIRHMMLLADLMTYKGDVLPVTRVGMSKMKESILMLASFEKTADHLFNAAVSGREDLIGGVTECIIMGIPMQIGTGMLKILQRTDPLPVYRNASNPIIS*

Click here to download the sequence:
Link to NCBI Protein BLAST