Transcript Information: S_Transcript_97340.p1


Annotated TAIR IDAT3G01460.1
Annotated Gene Namemethyl-CPG-binding domain 9
Annotated Gene Symbol(s)MBD9, ATMBD9
Annotation TypeOrtholog
Chromosome Positionchr3:173316-182038 | Forward length=2176
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.7488161055857
Replicate 24.3887277157613
Replicate 35.0132369912218
Condition 2: 8 Hour
Replicate 15.9503789363737
Replicate 25.537586296962
Replicate 35.8134129831767
Condition 3: 24 Hour
Replicate 15.6136041733255
Replicate 24.4062855990018
Replicate 33.9955713909095


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_97340.p1 GENE.S_Transcript_97340~~S_Transcript_97340.p1 ORF type:complete len:2222 (+),score=489.88,PHD|PF00628.25|0.0061,PHD|PF00628.25|5e-12,MBD|PF01429.15|1.2e-08,MBD|PF01429.15|4.9e+03,WHIM1|PF15612.2|5.3e-07,DDT|PF02791.13|3e-06,DDT|PF02791.13|7.9e+03,Bromodomain|PF00439.21|3e-05 S_Transcript_97340:218-6883(+)
ATGGACCCACAACAACAGCAGCAGCAGCGTTCCGTCCTTTCAATCGATCTCAACGAAATCCCATCTTTCACCGAAACCCTACCTTCCTCCTCCATTCTCTCTCCTACGTCACTCGTACGGTCCTTCCATGACCACCATCCCCCGGCCGAGGGCTCTCCGGCCGAGATCCCGTCTTCGTCATCCTCCGACCTCTGCCACGTCTGCTGCCGCGCCGTCCCTGAAACCGAGAGGCTGGTTTGCGACGCCTGTGAGCGAGGGTTTCATTTTGGGTGTGTGGTTGGGATGGTCACTGAGGAATGGGTTTGTAGAGAATGTGTTCAACAAGGGGTTGGTAGTAGGAGATGGAAGCTTGGGAGGAAGAACAACAAAGATGGTAAAGGCGTTGTCAGGCTTCTTGATATGAACGCTTCTCCTCCTAGCGATGGCGATGGCGAGATTAATATTCTTGGTGGGGATTCTTCGTCGAGGAAGCTCTCTTCGAGTGACAATACTTTTGGTGGCTATACATCTGGTGGTCCACTGTCGTATTCAAACTTTATCTATCCGGGTAATGGATTTGGCCTTAAAGCACCTCCAATAGTAACACATACATTGAGGTTGGATTTTCAAGATATTTTACATCATAGGCGATCTTCAGCTAGAAGCTTTGAGGAGATGACTTACAGTTCACAGCTAGGAAGAATTAGAAGTATTAGTAGTAGTTGTAGATTACAGCCCTGGAACCCCAGTGAAATTTTGCAGTCTCTTAGAGAATTTGTTACTGAAAGGCATGGCATCCTGGAAGAAGGTTGGCATGTGGAGCTAAAACAATCCAAGAATGGTTGTGAATCTTATGCAGTTTACCGCGCTCCTGATGGGAAGATATTTGAAACCATGTCAGATGTTGCCTGTTATCTTGGGTTGGCATCCAATGGAAATTTTGTGGAGCCTGAAACATGGAATAATGATTGCTCTGCTTTACGTCGGAATGGGTTACATCTACCAAAAAGAAGGAAGCTGACAAGGCTTCCTGTACGCAATGGTTTCAATGAGAATAGGGACAATTTGACTAGTGGCTTTAATAATGGTTTCTTGTCCAATGTTCAAGCTGAGCAGTTTTCCAGAGGCAAGTCTGGGAAAATGTGTGAAATTACAGAAGTTGTGCATGAAGAAAATTGCGTCAACGACTTTCATCAGTTTCACGAAGGACTTCCCCTTCAGTATGAAGATTTTTTCATTCTTTCCTTGGGGAAGATTGACACAAGAGCATCATATCATGACACCAATCAGATTTGGCCTGTGGGCTATAGGTCATGTTGGCATGATAGAATTACCGGTTCCCTCTTTCTGTGTGATGTCTTGGATGGTGGGGACTCTGGACCTATTTTCAAGGTCAGGAGGTTCTCATGCTCTGCTCTGCCCATTCCTTATGGGTCAACTATTTTGCATAGGCAAAGCAATCTTCAACTAGATTGCTCAAATAGAGATGAAAGAGAAAAGGTGATGACCTTAGATGAAGAAAGTTGTGTTGAAATGTTTCTCGCAGATCCTGGTGTTTCGGTGGAAGGTGATGCCCTAGCGTGGCTTCTCAATAGTCCTAGTGATGTTGATGGTCAAAAGCCTAGCCGCTACCAACCTGATGATTTCTTGGCTCATAATTCACCTGTGGGGGAAAAGATTGGTGAATTTGCAGTAGATGGCCGGTCATCATCGTTGGTTTGGAACATTTTGTCTCAGAAACTCGCTGATGCTTGCCTGCAAAGATACAAGCAGACAGGATCTTTAGAGTTCTTCTGCAAACATGTGAAAGATGGAATGTCATCATTTTATGACATCATGAATGAGAAGAACAAAGAGATGTTTTCATCACTGGATAAATTTAGCAGTTTGTTGGGACCCTTGAAGGTACCTTTTGTTGTGAATAGTGATGATGAACTTAATTCAACTGTTGAAGCTTTGAAGAATTGGATGAATCTGGACAGATTTGGACTGGATATAGAATTTGTTCAGGAACTTATAGAGCAATGTCCTGAAGTCCATCGATGTTCACGATATGAGTCTTTAAAGAGGAGAAATGGTTATTTAAGATCACCGTTGGTTGGAAATGGTTGTTTCCTCATTAATGGAAAGAGTTTAGAGCAATGTAAAAATGATCCTGTGTTAGAGGGCTTGTACAGAGAATACAAGGTCGACAGGGAATCTTCTGATGATAATCATTGCCGTCCCCCTGGCAAGCATTTGGGTATGAAGCTTCCACCGAATCTTGTCGGTGATGTCCTCCAGATCTGGGAGTTATTATGCCGTTTCCATGAGATTTTGGGTTTGGAGCCTCTGAAGTTCGATGAACTTGAGGCAGAACTCTTACGACCATGGTTTGAGAGCTTGTCTCAGCATAAGTCTTGTGAAAGAGATTCTCCTGGTGGTGCTGAGGTTATTTCTGCTGATGGATCTAATCTTCTGAGTGAACAAGCTTCATCATCAAGCAGCGAAATTGATCGACCTGAGGAGAACAGATTCATTGAGATGGAAACTGCAGCTATGAGGGAAGATGCTCAAGCCAGACTAGCACTGACAACTTGCAGTAAGTGTGCGTGTGTGTCATTGAGGGCGGCACACATCTCATTACTAGATGTGCTCGTGAGTGAGCTGCAGATAAAAGTGGCTGCTGTTGTGGATCCCACTATCGATGGAGAGTCCAAGTCGAGACCGGGTAGGAAGAGAGACGTTGACAGCTCTATACTTGCAATAAGACCAAAGCTCAATCTGCTTCCTCTTAATGAGCTGACCTGGCCAGAATTAGCTCGCAGATATATCTTAGCTGTGCTTTCCATGGATGGCAATCTTGAATCTGTAGAAAATGGTCTCCGTGAATGTGGCAAGGTCTTTCGCTGCTTACAGGGTGATGGCGGTGTCCTTTGTGGATCCCTTGTGGGGGTGGCAGGAATTGAAGCAGATGCACTGCTTCTTGCAGAAGCTTCAAAACGAATTTATGGATCTCTGAGCAGTGAAAATCATGTTCTGGTCATAGAAGATGATGATCCTGAATCAGTTAGTGCTTCTGGAAGAACATCACTTACTAATGGTAACATTCCAGAGTGGGCTCAGGCTCTAGAGCCTGTGAGGAAGTTGCCTACTAATGTCGGAACAAGAATCAGAAAGTGCGTGTATGAAGCTCTGGAGAAGGATCCACCAGAATGGGCAAGAAAGATACTGGAGCATTCAATTAGCAAGGAGGTTTACAAGGGCAATGCTTCTGGACCTACCAAGAAAGCTGTTCTATCTGTGCTAACGGATGTAATCAGTGAAGGGTCACAACAGAAAACTCTTATAGAAAAAAAGAAGACTATTTTGTCAATACCTGACATCATAACAAAGAGGTGCCGTATTCTCTTACGTCGTGCTGCTGCTGCTGATGAAGAGAAGATATTCTGTAATTTGCTTGGCAGAAATTTGGTAAATTCTTCTGAGAATGATGAGGAGGGACTTCTTGGATCCCCTGCAATGGTTTCTCGCCCTCTAGATTTTAGGACAATTGATTTGAGGCTGGCTGTTGGAGCCTATGGTGGATCGCATGAAGCCTTCCTTGAGGATGTTCGTGAGTTGTGGACAAATATACGCTCTGCACATGCGGAGCAGACAGATCTGGTTCAGCTGGCCGAAACGTTGTCCCAGAATTTTGAGTCACTGTATGAGGAAGAGGTTGTTGTTCTTGTTCGGAAACTTAAGGAGTATGCTGAATTGGAAGAGATAAGCACTGAAGCGAAAAAGGAGATTGGAGATATCGTTGCCTCTACAAGCGAGATTCCTAAAGCTCCATGGGATGAGGGTGTCTGCAAAGTCTGTGGTGTAGACAAAGATGATGATAGTGTTCTTTTATGTGACACTTGTGATGCAGAATATCATACTTACTGCTTGAATCCTCCGCTTGCTAGAATTCCAGAAGGGAACTGGTATTGTCCCTCATGTGTTTCTGGGGTAAATATGTTAAAAGTTGCTTCCAAAAGTGCTCAATTTGTTGGCGCACGACAGCGTAGAAAGTATCATGGAGAAGGAATCCGCAACTACTTGGAGGAGCTTGGACGATTAGCTGCTGTATTGAAGCAGAAGGAGTATTGGGAATTTAGTGTAGAGGAGAGGATTTTGCTCCTTAAGTTTTTGTGTGATGAGGTGCTGAATTCAATTCTCATCCGGCAGCATCTAGAGCAATGTTCCGAAATGTCAGCTGATCTACAGCAGAGGCTGCGGTTGTTTTATTCAGAGTGGAAAAATCTCAAGCTACGAGAAGATGTATTGGCTACTAAAGCTGCAAAACTCGGTATGAGTACCACAAATGTGGCTGGGGATTCTAATATGCAGGGGTTTATTGATACAGTCGCTAGCCACAGCACTTGCACAGGGCTTCAGTCTGCTGTAAGTGAGAGATCTGACCACATTACTTCTGTTCCTGATACTGTCTCTCAAGAAAAAGGTGGCGTGAATGCTTTGCATTCCAATAATCAGAATGGCAGCCAAAATGTCAAGCTCTTGGAGAGAACTTGTAACAGTGATGTTAAGCAGTCTGTAGATTTAGATTGTCAGGTGGAAGATATTGCCAAGGCTGTGAATGAAGATAGTAGCTTCCCTGAAAATTTTGATCTTCAGGAGAGGTTATCCAAACGCCAGAAAACATGTTCACTACAGGAATCTCCTGTGTCCAATCCTCTGCCACGTGAAACTGTCGGCACAGATGGTGAATCATCTTGCCATGTCAAAATGCAAGAAGTCTCTCCTGTGCGCAAATCTGAAGATCTACAAGGAGCTTCTGTTTCATCTACATGTGTGAACTCTGTTGCAGCTGATTCCAGTTCAAATGAGTTGCAGGCCTACACTTTGGACTTAATCGCTCTTCAGAAGGATCTATCTTCACTTCAGCAGTCAATTGCAACTGCAGAGTGTCAGCTTCTGAAGTCATCTGTCCGCATGGAATATCTAGGCAGTGATTGTTCTGGTCGAATGTATTGGGTCTCAGCCCAGCCAGGTTCACGTCCTTGCATTGTTGTTGATGGTACTATGGCCTTGCTACCTAAAACGCAAGGGATGATTCATGGGAGCATGGTGAGGGATGTTTCACATTTTGACAAGCCTGCTTCTTGTGGATCGGACAGATATACGAATGTTGGCGGTTCAAACATTTCTTGTCCGTTTGTTTACAGGGGAGATTGTTCTACCCCCACTTGCTCTCAGTGGGTCTCTTTTGATTCTGACTCTGAAATTAGGGAACTCATTAAATCATTGAAGGATAACCACCCGAAGGAAAGAGAACTGAAAGACTCAATTCTTCACTGGCAAAAGCTGAGATTTCATGAAATTCAGCCAACTGGAAGACAAGACCAGGCTCCTGTTGTTCCAGAGTCTTCTGAGAAAAAAGATGTGCGTAATCTGCTTGTCAGAGCATCCTCTGTGCTTGAGCGTAAATACGGACCTTTCTTACGAGCAGATGAGGCCCATTTGAAGAAAAAATGGAAGCGATCAAGAGTAACCAATGACGAAAAACTGTACAGATGCCAATGTCTTGAACCTATCTGGCTTTATAGACACCATTGTCTCTCTTGCCACCGAACCTTTTTCAGTGCTGAGGAACTCGACAAGCATAATGATAGTAAATGCAAATCAACTCCATCAGTTTCTGGGAAAAACAAGCTGAGTGATGAGCTGGTTGTTAGAAAATCAGAAACCCAGCAAGTTGCAGCAGGATTGGATACAATACAAGTATCCAGAAGTGCTGGGTCTGAGCCCTCACGATTGATTAAATATCAAAATGAGGAATCAATGTGCCCTTATAAATTTGAAGAAATAAGCTCCAAGTTCATCACAAATGATTCGATCAAAGAGTTGGTTAGTGGAATCGGATTAATTGGATCTGAAGGGACACCATCGTTTGTCCCATCCGTATCTCCTTATTTGAGTGATCCGGCACTGTTAGGTCTCCCTCAAGAGATCGTTGCTGTTGATCAATGCAATATCTCTGAGAAGGCTGTTGGGCATGTTGATCAAATCGCAGCTAAAGGCCACATTGATAGTGTGAGTGACGTCTACCATCGGAGAATCCAGACAAGCAAAACTGGTGAGAACTTAGAAACAGGGAATTCCTTACATGGAATTCAGGGTGAAAGAGGGAGTTTTAGTTGTGCATCTTCTATGGCAGCAGATCCCTGCTGTACAGTGTCGGATTGTTCTTTGAGGCCATTGGCTGGCAGAGGTGCTCAAATTCTGAAACAACTGAAAATTAGCTTGCTTGACATGGAAGCCGCATTGCCGGAAGAGGCTCTTAGGGTATCCAAGGTTCATTCTGAGAGGAGAAGAGCTTGGCATGCTTTTGTGAAGGCAGCAAAAACAATATTTGAGATGGTACAGGCGACAATTGTACTTGAGGATATGATAAAGACAGAGTACTTGAAAAACGAATGGTGGTATTGGTCATCACTCTCTGCAGCTGCCAAAACCTCGACATTGTCTTTGCTTGCCCTGCGTATCTATGCCCTGGATAATGCCATCATTTATGAGAGAACTGGAGCTGATTTAAATCAGACTTGCAGTTCAAGGCACAGTGGTGATGTAGATCAGCAATCATTGTCTAATTTGGATTCATCAGATAAATCGAGGCAAACCAGGAGAGCAACTAGGAAAAGGAAGGAGGCAGAAGGCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_97340.p1 GENE.S_Transcript_97340~~S_Transcript_97340.p1 ORF type:complete len:2222 (+),score=489.88,PHD|PF00628.25|0.0061,PHD|PF00628.25|5e-12,MBD|PF01429.15|1.2e-08,MBD|PF01429.15|4.9e+03,WHIM1|PF15612.2|5.3e-07,DDT|PF02791.13|3e-06,DDT|PF02791.13|7.9e+03,Bromodomain|PF00439.21|3e-05 S_Transcript_97340:218-6883(+)
MDPQQQQQQRSVLSIDLNEIPSFTETLPSSSILSPTSLVRSFHDHHPPAEGSPAEIPSSSSSDLCHVCCRAVPETERLVCDACERGFHFGCVVGMVTEEWVCRECVQQGVGSRRWKLGRKNNKDGKGVVRLLDMNASPPSDGDGEINILGGDSSSRKLSSSDNTFGGYTSGGPLSYSNFIYPGNGFGLKAPPIVTHTLRLDFQDILHHRRSSARSFEEMTYSSQLGRIRSISSSCRLQPWNPSEILQSLREFVTERHGILEEGWHVELKQSKNGCESYAVYRAPDGKIFETMSDVACYLGLASNGNFVEPETWNNDCSALRRNGLHLPKRRKLTRLPVRNGFNENRDNLTSGFNNGFLSNVQAEQFSRGKSGKMCEITEVVHEENCVNDFHQFHEGLPLQYEDFFILSLGKIDTRASYHDTNQIWPVGYRSCWHDRITGSLFLCDVLDGGDSGPIFKVRRFSCSALPIPYGSTILHRQSNLQLDCSNRDEREKVMTLDEESCVEMFLADPGVSVEGDALAWLLNSPSDVDGQKPSRYQPDDFLAHNSPVGEKIGEFAVDGRSSSLVWNILSQKLADACLQRYKQTGSLEFFCKHVKDGMSSFYDIMNEKNKEMFSSLDKFSSLLGPLKVPFVVNSDDELNSTVEALKNWMNLDRFGLDIEFVQELIEQCPEVHRCSRYESLKRRNGYLRSPLVGNGCFLINGKSLEQCKNDPVLEGLYREYKVDRESSDDNHCRPPGKHLGMKLPPNLVGDVLQIWELLCRFHEILGLEPLKFDELEAELLRPWFESLSQHKSCERDSPGGAEVISADGSNLLSEQASSSSSEIDRPEENRFIEMETAAMREDAQARLALTTCSKCACVSLRAAHISLLDVLVSELQIKVAAVVDPTIDGESKSRPGRKRDVDSSILAIRPKLNLLPLNELTWPELARRYILAVLSMDGNLESVENGLRECGKVFRCLQGDGGVLCGSLVGVAGIEADALLLAEASKRIYGSLSSENHVLVIEDDDPESVSASGRTSLTNGNIPEWAQALEPVRKLPTNVGTRIRKCVYEALEKDPPEWARKILEHSISKEVYKGNASGPTKKAVLSVLTDVISEGSQQKTLIEKKKTILSIPDIITKRCRILLRRAAAADEEKIFCNLLGRNLVNSSENDEEGLLGSPAMVSRPLDFRTIDLRLAVGAYGGSHEAFLEDVRELWTNIRSAHAEQTDLVQLAETLSQNFESLYEEEVVVLVRKLKEYAELEEISTEAKKEIGDIVASTSEIPKAPWDEGVCKVCGVDKDDDSVLLCDTCDAEYHTYCLNPPLARIPEGNWYCPSCVSGVNMLKVASKSAQFVGARQRRKYHGEGIRNYLEELGRLAAVLKQKEYWEFSVEERILLLKFLCDEVLNSILIRQHLEQCSEMSADLQQRLRLFYSEWKNLKLREDVLATKAAKLGMSTTNVAGDSNMQGFIDTVASHSTCTGLQSAVSERSDHITSVPDTVSQEKGGVNALHSNNQNGSQNVKLLERTCNSDVKQSVDLDCQVEDIAKAVNEDSSFPENFDLQERLSKRQKTCSLQESPVSNPLPRETVGTDGESSCHVKMQEVSPVRKSEDLQGASVSSTCVNSVAADSSSNELQAYTLDLIALQKDLSSLQQSIATAECQLLKSSVRMEYLGSDCSGRMYWVSAQPGSRPCIVVDGTMALLPKTQGMIHGSMVRDVSHFDKPASCGSDRYTNVGGSNISCPFVYRGDCSTPTCSQWVSFDSDSEIRELIKSLKDNHPKERELKDSILHWQKLRFHEIQPTGRQDQAPVVPESSEKKDVRNLLVRASSVLERKYGPFLRADEAHLKKKWKRSRVTNDEKLYRCQCLEPIWLYRHHCLSCHRTFFSAEELDKHNDSKCKSTPSVSGKNKLSDELVVRKSETQQVAAGLDTIQVSRSAGSEPSRLIKYQNEESMCPYKFEEISSKFITNDSIKELVSGIGLIGSEGTPSFVPSVSPYLSDPALLGLPQEIVAVDQCNISEKAVGHVDQIAAKGHIDSVSDVYHRRIQTSKTGENLETGNSLHGIQGERGSFSCASSMAADPCCTVSDCSLRPLAGRGAQILKQLKISLLDMEAALPEEALRVSKVHSERRRAWHAFVKAAKTIFEMVQATIVLEDMIKTEYLKNEWWYWSSLSAAAKTSTLSLLALRIYALDNAIIYERTGADLNQTCSSRHSGDVDQQSLSNLDSSDKSRQTRRATRKRKEAEG*

Click here to download the sequence:
Link to NCBI Protein BLAST