Transcript Information: S_Transcript_97342.p1


Annotated TAIR IDAT5G43820.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:17618948-17620588 | Forward length=546
E-Value4.4E-209
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.97662389853873
Replicate 21.5383229416249
Replicate 31.0490363643883
Condition 2: 8 Hour
Replicate 11.6434245748983
Replicate 21.1493793796557
Replicate 31.7600241141728
Condition 3: 24 Hour
Replicate 11.1623882958298
Replicate 21.4554741379306
Replicate 31.0644165528765


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_97342.p1 GENE.S_Transcript_97342~~S_Transcript_97342.p1 ORF type:complete len:545 (+),score=89.59,PPR_2|PF13041.2|90,PPR_2|PF13041.2|0.00075,PPR_2|PF13041.2|0.0039,PPR_2|PF13041.2|4e-07,PPR_2|PF13041.2|1.3e-06,PPR_2|PF13041.2|4.8e-12,PPR_2|PF13041.2|8.5e-11,PPR_2|PF13041.2|1e+04,PPR_2|PF13041.2|0.003,PPR_2|PF13041.2|0.022,PPR_2|PF13041.2|3.1e+02,PPR|PF01535.16|9.9,PPR|PF01535.16|9,PPR|PF01535.16|0.0079,PPR|PF01535.16|8.9e-05,PPR|PF01535.16|5.6e-06,PPR|PF01535.16|8.7e-06,PPR|PF01535.16|1.4e-05,PPR|PF01535.16|7e+02,PPR|PF01535.16|25,PPR|PF01535.16|0.032,PPR|PF01535.16|3.4e+02,PPR_1|PF12854.3|0.35,PPR_1|PF12854.3|20,PPR_1|PF12854.3|1.7e-08,PPR_1|PF12854.3|3.1,PPR_1|PF12854.3|2.3e-07,PPR_1|PF12854.3|0.0024,PPR_3|PF13812.2|1.4e+04,PPR_3|PF13812.2|3e+02,PPR_3|PF13812.2|1.5,PPR_3|PF13812.2|0.3,PPR_3|PF13812.2|0.00059,PPR_3|PF13812.2|0.03,PPR_3|PF13812.2|0.0015,PPR_3|PF13812.2|1.4e+04,PPR_3|PF13812.2|2.6,TPR_14|PF13428.2|1.6e+04,TPR_14|PF13428.2|4.2e+03,TPR_14|PF13428.2|3.4,TPR_14|PF13428.2|19,TPR_14|PF13428.2|2.9e+02,TPR_14|PF13428.2|1.5e+03 S_Transcript_97342:214-1848(+)
ATGCCAGAAAACTACTCTTTCTTCTCTTCTCTCAACGACAATCTCCTCGAATTCGACCGTTATGTTTCCCAACCAAACCCTAACCCTAACCCTACTTTAGACGAATCGAAAGTGCTAGCCGAACTCTCCAATACATTACCAATTCGACGCACTACAACTCCAATCCCCAATCTCCTCTCTCCCGATTCATCCCTGATTCAAAACGAAGCCCAAATTAGGGTTTCTCCCGATGGGTTTTTACCGTTAGAAGATAAACTACGAGGAGTATTTCTCCAAAAACTCAAGAGCAAAGCTCTAATAGAGAATGCCTTATCTACTGCTTTGGATGATGATGAGCTCTGTATTGATGTAGTTTCTAGGGTTTTAGATAGAGGAAACTTAGGAGGTGGAGATATGGTCTTGTTTTTTGATTGGGCAATTAAGCAACCTGGTATACGTAGAGACCTAGGTATGTATCATGTCATTCTTAAGGCCCTAGGTAGGAGGAAATTTCTAGATTTTATGGTGGGTAAGTTTAAGGAAATGGGTGTTGAGGGGATTAACCCTACTTGTGAGACACTTGTCACTGTAACGGATAGTTTTGTTAAGGCCCGGTATGTGTCTCGAGTGGTTGAGATGTTTGGGAAGCTTGAAGAGTTGGGGATGAAGTGTGATAGTGATGCCTTCAATGTGCTCTTAAGGTGTTTGTGTAAGAGGTCTCATGTTGGCATGGCGAATTCACTTTTAAATTCGATGAAGGAGAAAGTGGCTTTTGATTGTGCGAGTTATAATGTGGTGATTGGTGGGTGGTCGAGATTAGGTCGGATGAGTGAGATGGAGAAGTGTCTCAAAGCGATGGTGGAAGATGGGTTTAGAGCAGATGGTGAGACATATAGTTGTCTTATAGAGGGTTTGGGTAGAGCTGGTCGGATTGATGATGCTGTTAAGATTTTTGAAAGCATGGACAGTCAAGAGCTTCAGCCTGATACATGTGTTTATAATGCCATGATTTGTAACTATGTCGCAGTGGGTGATTTTGACGAATGTAAGAAGTATTATGAGGAAATGTTGAGAAAAAACTGTCCACCAGATTTGAATACCTTTACAAAACTAATTAGTGGTTTGCTTAAGGCTAGAAAAGTTGCTGATGCACTTGAATTGTTTGATGAAATGTTGCATCGAGGAGTTACTCCTACCACTGGGACTATAACTTCTTTCATTTATCCTTTGTGTAGTTATGGTCCTCCCCATGCTGCCATGATGATTTACAAAAGTGCTAGGAAAGCTGGATGTGAAATATCATTGGCAGCTAATAAGATGTTGCTTATGCGGAATTCTCATTTTGGTAAATGTGGAACGGTTCTGAAGTTGTGGAATGACATGCAAGAGTGTGGCTATTCGTCTGACATGGAAGTTTATGAGTATGTCATTAATGGTTTGTGCAACAATGGGCAGCTTGATGTGGCCGTCCTTGTGATGGAGGAGGCTTTACGCAAGGGGTTATGTCCAAGCAGGCCAATTTGTACCAAACTGAATAACAAACTTGTGGCTTTCAATAAAACAGAAAGCGCTTATAAGCTTTTCTTGAAAATAAAAGAAGCTCGTGTAAATGAAAATGCCAGAAGATACTGGCGCGCTAATGGCTGGCACTTTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_97342.p1 GENE.S_Transcript_97342~~S_Transcript_97342.p1 ORF type:complete len:545 (+),score=89.59,PPR_2|PF13041.2|90,PPR_2|PF13041.2|0.00075,PPR_2|PF13041.2|0.0039,PPR_2|PF13041.2|4e-07,PPR_2|PF13041.2|1.3e-06,PPR_2|PF13041.2|4.8e-12,PPR_2|PF13041.2|8.5e-11,PPR_2|PF13041.2|1e+04,PPR_2|PF13041.2|0.003,PPR_2|PF13041.2|0.022,PPR_2|PF13041.2|3.1e+02,PPR|PF01535.16|9.9,PPR|PF01535.16|9,PPR|PF01535.16|0.0079,PPR|PF01535.16|8.9e-05,PPR|PF01535.16|5.6e-06,PPR|PF01535.16|8.7e-06,PPR|PF01535.16|1.4e-05,PPR|PF01535.16|7e+02,PPR|PF01535.16|25,PPR|PF01535.16|0.032,PPR|PF01535.16|3.4e+02,PPR_1|PF12854.3|0.35,PPR_1|PF12854.3|20,PPR_1|PF12854.3|1.7e-08,PPR_1|PF12854.3|3.1,PPR_1|PF12854.3|2.3e-07,PPR_1|PF12854.3|0.0024,PPR_3|PF13812.2|1.4e+04,PPR_3|PF13812.2|3e+02,PPR_3|PF13812.2|1.5,PPR_3|PF13812.2|0.3,PPR_3|PF13812.2|0.00059,PPR_3|PF13812.2|0.03,PPR_3|PF13812.2|0.0015,PPR_3|PF13812.2|1.4e+04,PPR_3|PF13812.2|2.6,TPR_14|PF13428.2|1.6e+04,TPR_14|PF13428.2|4.2e+03,TPR_14|PF13428.2|3.4,TPR_14|PF13428.2|19,TPR_14|PF13428.2|2.9e+02,TPR_14|PF13428.2|1.5e+03 S_Transcript_97342:214-1848(+)
MPENYSFFSSLNDNLLEFDRYVSQPNPNPNPTLDESKVLAELSNTLPIRRTTTPIPNLLSPDSSLIQNEAQIRVSPDGFLPLEDKLRGVFLQKLKSKALIENALSTALDDDELCIDVVSRVLDRGNLGGGDMVLFFDWAIKQPGIRRDLGMYHVILKALGRRKFLDFMVGKFKEMGVEGINPTCETLVTVTDSFVKARYVSRVVEMFGKLEELGMKCDSDAFNVLLRCLCKRSHVGMANSLLNSMKEKVAFDCASYNVVIGGWSRLGRMSEMEKCLKAMVEDGFRADGETYSCLIEGLGRAGRIDDAVKIFESMDSQELQPDTCVYNAMICNYVAVGDFDECKKYYEEMLRKNCPPDLNTFTKLISGLLKARKVADALELFDEMLHRGVTPTTGTITSFIYPLCSYGPPHAAMMIYKSARKAGCEISLAANKMLLMRNSHFGKCGTVLKLWNDMQECGYSSDMEVYEYVINGLCNNGQLDVAVLVMEEALRKGLCPSRPICTKLNNKLVAFNKTESAYKLFLKIKEARVNENARRYWRANGWHF*

Click here to download the sequence:
Link to NCBI Protein BLAST