Transcript Information: S_Transcript_97394.p1


Annotated TAIR IDAT3G23780.1
Annotated Gene Namenuclear RNA polymerase D2A
Annotated Gene Symbol(s)NRPD2A, DRD2, NRPD2, DMS2, NRPE2
Annotation TypeOrtholog
Chromosome Positionchr3:8567971-8573819 | Reverse length=1172
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 114.496154646315
Replicate 212.985631933272
Replicate 312.671747474659
Condition 2: 8 Hour
Replicate 122.861242103218
Replicate 222.316289412972
Replicate 324.350885509002
Condition 3: 24 Hour
Replicate 110.705439591417
Replicate 211.913510224322
Replicate 314.406631324114


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_97394.p1 GENE.S_Transcript_97394~~S_Transcript_97394.p1 ORF type:complete len:1208 (+),score=282.62,RNA_pol_Rpb2_6|PF00562.24|3e-97,RNA_pol_Rpb2_7|PF04560.16|4.8e+03,RNA_pol_Rpb2_7|PF04560.16|1.6e+04,RNA_pol_Rpb2_7|PF04560.16|1.5e+04,RNA_pol_Rpb2_7|PF04560.16|1.1e-31,RNA_pol_Rpb2_1|PF04563.11|1.5e-31,RNA_pol_Rpb2_4|PF04566.9|1.2e+04,RNA_pol_Rpb2_4|PF04566.9|4.1e+03,RNA_pol_Rpb2_4|PF04566.9|6.7e-18,RNA_pol_Rpb2_3|PF04565.12|7.9e-17,RNA_pol_Rpb2_2|PF04561.10|3.6e-14,RNA_pol_Rpb2_5|PF04567.13|1.3e-08 S_Transcript_97394:300-3923(+)
ATGGGTGTTGATGAAAAGCATGGTTTGGGCACCAGTAGCAACGGGAAAGCAGCACTGGATGATGCTGACGCAGAAATATTGTGGGATAGCGAAGATATGGAGTCTGATGATGATGCTGACGTCATGGACTTGAACCTCGAAGATGTTGGTGAGGCGTCTCTGATGAACTTTTGCAAGAAAGCCTCTTCAGCCTTCTTCAAGCAATATGGCCTTATTAGCCACCAGATCAACTCGTACAACACCTTTGTGAACTATGGGATTCAGAAGGTGTTTGACAACATCGGTGAGATCAGAATTGAGCCTGGTTTTGATCCTTCGAAGAAGGGGGATGGCGAATGGAAGTATGCTACTGTTCGGTTTGGAAAGGTTGAGCTCGAGCAACCTATGTTTTGGACTGGGGAGAAGTTCCATGCTGATGGTGGTGAAGACTTCATCAAATTACTACCGCGGCATGCTCGGCTGCAGAACATGACATATTCTGCGAGATTGAAAGTTGAGACGAAGCTTGAGGTATATACTTTAGAGAAGGTCCGCAGTGACAAGTTCAAAACTGGAAAATCAGAGTACGTGGACAAAAAGATCTTCAAAGAAGACAAAAGTGATGTCATTATAGGAAGGATCCCTGTTATGGTGAAATCTGATATTTGCTGGATGAGTGAAGCGGAAAAAGGTGATTGTGAATTTGATCAAGGAGGTTATTTTATTGTCAAGGGTGCTGAGAAGACATTTATTGCACAAGAACAGATCTGCTTGAAGAGGCTCTGGATTTCGAATGATCCATACTGGAAGGTTGCTTACAGGTCCGAGGTTAAGAGGAGAAGAGTGCATGTTAAGCTAGTGGAAAATCCAAAGGCTGAAAATATCCGAGGAGGAGAGAAAATGATTAGTGTGTATTTCTTATTGGTGGAAGTTCCGATCTGGATATTGTTTTTTGCACTGGGTGTGAAATCCGACAAGGAGGTTGTCGATTTGATAGATTACAACACTGATGATGGGCGCATCACAAACATTCTGTTTGCATCCATTCATGATGCCGATGAGAAGTGTGAAGGCTTCCGTTTTCAAGGTAGAGCTTTCGAATACATTGACAAAGCCATCAGGTCGTGCAAGTTTCCTCCAGTGGAGTCAACCCAGGAATTCCTCGACAACAACCTTTTCCCTAGTCTATCAGGGAACAAGCGCAAAGCACGCTTTCTGGCCTATATGGTCAAGTGTCTCTTGCAAGGATTTACTGGTAGGAGAAAGTGTGATAATAGGGATGATTTTAGGAACAAAAGGCTGGAGTTGGCTGCTGAGCTTCTAGAGCGAGAGCTGAGGGTTCACATGAGGCATGCTGAGAAGCGAATGGTGAAGGCGATGCAGCGGGATCTGTATGCAGATCGTGAGCTGTACTCCATCGAGCATTACTTGGATGCATCAATTGTCACCAATGGCCTCACTCGAGCATTCTCCACTGGTGCATGGGCCCATGCTTATAAGAAGTCTGATAGGATCTCAGGTGTGGTGGCAAATCTTAGGCGTACCAATCCATTGCAAAGTACCTGTGATATGAGGAAAACCCGTCAACAGGTTTCATACACAGGGAAGGTCGGAGATGCTAGATACCCGCACCCATCTCACTGGGGAAAAGTTTGCTTTTTGTCCACACCTGATGGTGAGAACTGCGGTCTTGTGAAGAATCTAGCTGCTACTGGACTCGTCAGCACTAAAGTTATGGAACCACTATTTGACAAACTGATGAGCTGTGAAATGGAGAAATTAGTGGATGATACTAGTACTTCGCTGCATGGGAAACACAAAGTTCTTTTAGATGGTGAGTGGGTTGGAGTATGTGCTGATTCCCGCTCCTTTGTTCAAGAGTTTCAAAGAAAGCGTCGAAGGAAGTATTTTCCTAGTCAGGTTGAAATCAAGCATGATATACAGAATGAAGAAGTTCGGGTATTCTCTGATGCTGGAAGAATTCTAAGGCCTCTTCTAGTGGTTGAGAATTTGAGAAAGATCAAGACATTGAAAGGGGATGATTATTCCTTCCAAACACTTCTGGATAAGGGAATAATTGAACTGGTTGGGACTGAAGAGGAAGAAGACTGCCACACTGCATGGGGAGTGAAGTACCTCTTCATGGGAGAGAAGGGCAAAGAAGCTGTCAAGTACACTCACTGTGAGCTTGACATGTCATTTCTTCTAGGTGTAAGTTGTGGAATCATCCCGTTTGCCAATCATGATCATGCTAGAAGGGTCCTCTACCAGTCGGAGAAGCATTCTGGACAAGCTATTGGATATTCGACCACAAACCCCAACATCAGAATCGATACCTTGTCTCACCAGATGTACTATCCTCAAAGACCGCTTTTTCGGTCTGTGATTTCTGATTGTCTTGGGAAACCTGGAAATCTTGTAGGGCGCAATCAAGTTCTCCCAAAGGCAGAGTTCTTCAATGGGCAAACTGCTATTGTGGCTGTAAATGTGCACCTTGGATACAATCAGGAAGATTCCTTGGTCATGAACCGAGCTTCGTTGGAGCGTGGCATGTTTCGGACAGAGCACATTAGGAGTTACAAGGGTGAGGTTGACAACAAGGAATCATTGGAAAAGAGGCGTAAATTTGAGGATAGTATTAGTTTCGGGAAAATACAGAGTAAGTTAGGGCGTGTTGACAGTCTTGATGATGATGGATTCCCGTATATTGGAGCAAACCTGCAAAGTGGTGATATCATCATTGGTAGATGTGCTGAGTCTGGGGCTGACCATAGTGTGAAGCTGAAGCACACAGAAAGAGGAATGGTGCAGAAAGTGGTCTTATCAGCAAATGATGATGGGAAGAATTATGCTGTTGTATCACTTAGACAGGTTCGCTCGCCATGTCTTGGTGACAAGTTTTCTAGCATGCATGGGCAGAAGGGTGTTCTTGGATTTCTGGAGTCACAGGAGAATTTCCCTTTCACAAAGCAAGGCATAGTTCCGGATATTGTAATCAACCCTCATGCGTTCCCCTCAAGACAAACTCCAGGCCAACTACTGGAGGCGGCTCTGGGCAAGGGTATTGCATGTGGTGGTTCGTTGAGATATGCTACCCCCTTCTCTACTCTCTCTGTTGAAGCCATAACCGAGCAGCTTCATAGGGCTGGTTTCTCCAAATGGGGAAACGAAAGGGTCTACAATGGTAGAACAGGAGAGATGATACGCACTCTCATATTCATGGGCCCTACCTTTTACCAGCGACTAGTGCATATGGCCGAGGACAAAGTGAAGTTCCGCAACACTGGCCCAGTCCATCCTCTGACTCGACAGCCTGTAGCAGACAGGAAGCGTTTTGGGGGTATCAAGTTCGGGGAAATGGAGCGTGACTGCCTGATTGCCCATGGTGCTTCAGCTAATCTACATGAGCGGCTCTTCACACTCAGTGACCAATCGCAGATGCATATTTGTCGGAGATGCAAGAATATTGCAAATGTCATCCAAAGGGCTGTTCCTGGTGGCAAAAAGATTCGAGGGCCTTACTGCCGGTTCTGTGAATCTGTTGATGACATTGTGAAGGTGAGTGTGCCCTATGGAGCAAAGCTTTTGTGCCAAGAACTGTTCAGCATGGGTATATCTCTTAGGTTTGAGACCCAGCTGTGTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_97394.p1 GENE.S_Transcript_97394~~S_Transcript_97394.p1 ORF type:complete len:1208 (+),score=282.62,RNA_pol_Rpb2_6|PF00562.24|3e-97,RNA_pol_Rpb2_7|PF04560.16|4.8e+03,RNA_pol_Rpb2_7|PF04560.16|1.6e+04,RNA_pol_Rpb2_7|PF04560.16|1.5e+04,RNA_pol_Rpb2_7|PF04560.16|1.1e-31,RNA_pol_Rpb2_1|PF04563.11|1.5e-31,RNA_pol_Rpb2_4|PF04566.9|1.2e+04,RNA_pol_Rpb2_4|PF04566.9|4.1e+03,RNA_pol_Rpb2_4|PF04566.9|6.7e-18,RNA_pol_Rpb2_3|PF04565.12|7.9e-17,RNA_pol_Rpb2_2|PF04561.10|3.6e-14,RNA_pol_Rpb2_5|PF04567.13|1.3e-08 S_Transcript_97394:300-3923(+)
MGVDEKHGLGTSSNGKAALDDADAEILWDSEDMESDDDADVMDLNLEDVGEASLMNFCKKASSAFFKQYGLISHQINSYNTFVNYGIQKVFDNIGEIRIEPGFDPSKKGDGEWKYATVRFGKVELEQPMFWTGEKFHADGGEDFIKLLPRHARLQNMTYSARLKVETKLEVYTLEKVRSDKFKTGKSEYVDKKIFKEDKSDVIIGRIPVMVKSDICWMSEAEKGDCEFDQGGYFIVKGAEKTFIAQEQICLKRLWISNDPYWKVAYRSEVKRRRVHVKLVENPKAENIRGGEKMISVYFLLVEVPIWILFFALGVKSDKEVVDLIDYNTDDGRITNILFASIHDADEKCEGFRFQGRAFEYIDKAIRSCKFPPVESTQEFLDNNLFPSLSGNKRKARFLAYMVKCLLQGFTGRRKCDNRDDFRNKRLELAAELLERELRVHMRHAEKRMVKAMQRDLYADRELYSIEHYLDASIVTNGLTRAFSTGAWAHAYKKSDRISGVVANLRRTNPLQSTCDMRKTRQQVSYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAATGLVSTKVMEPLFDKLMSCEMEKLVDDTSTSLHGKHKVLLDGEWVGVCADSRSFVQEFQRKRRRKYFPSQVEIKHDIQNEEVRVFSDAGRILRPLLVVENLRKIKTLKGDDYSFQTLLDKGIIELVGTEEEEDCHTAWGVKYLFMGEKGKEAVKYTHCELDMSFLLGVSCGIIPFANHDHARRVLYQSEKHSGQAIGYSTTNPNIRIDTLSHQMYYPQRPLFRSVISDCLGKPGNLVGRNQVLPKAEFFNGQTAIVAVNVHLGYNQEDSLVMNRASLERGMFRTEHIRSYKGEVDNKESLEKRRKFEDSISFGKIQSKLGRVDSLDDDGFPYIGANLQSGDIIIGRCAESGADHSVKLKHTERGMVQKVVLSANDDGKNYAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGSLRYATPFSTLSVEAITEQLHRAGFSKWGNERVYNGRTGEMIRTLIFMGPTFYQRLVHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDQSQMHICRRCKNIANVIQRAVPGGKKIRGPYCRFCESVDDIVKVSVPYGAKLLCQELFSMGISLRFETQLC*

Click here to download the sequence:
Link to NCBI Protein BLAST