Transcript Information: S_Transcript_98238.p1


Annotated TAIR IDAT4G33780.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: short hypocotyl in white light1 (TAIR:AT1G69935.1); Has 40 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr4:16202174-16203617 | Reverse length=203
E-Value8E-13
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 16.4653053848179
Replicate 29.5979367001618
Replicate 37.5021299323121
Condition 2: 8 Hour
Replicate 113.734997153408
Replicate 214.029803384235
Replicate 316.739563938375
Condition 3: 24 Hour
Replicate 19.6265588263635
Replicate 210.627663055575
Replicate 310.972301803356


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_98238.p1 GENE.S_Transcript_98238~~S_Transcript_98238.p1 ORF type:5prime_partial len:177 (+),score=22.89 S_Transcript_98238:3-533(+)
TTAGTGGTGGTGGTGGAACCACACTTTGCCAATAATCAATCCATACTCAATTCAACATCTCACCTAACCAAGCTAACAAGCTTCAATCAAAAATTTTCTTCAATATTAATGGCGATTTCCTCAACCTCTCTCTCTTCTTCTTCTTTATCAAGACTACCTCACCATCATCAACTTCATTTTCCTATTCTCTCTCCTCCTCCTCGCCTTCACTTTCACTTTCAACTTCACCTCCTCCGTACCTTCCCCTCTCTTCATGCTTCTCGTCGTCAGGAAGGTGATGAGCTGTTCAATGAGAGCCAAAAATGGAATCGATTCGATTTCGACAATTACAGAGATTACGACGACGAAGATGATGAAGAAGAAGAGGAAGAAGAAGATCGGAGTTTAGATTTGCTAGTTAGGTTTGTCGAAAATATCTTCCGAAAAATATCTAAACGAGCTCGTAAGGCCGTTCGTTCCGTTCTCCCTCACGCTATCTCCACCAAATTGGTGGCATTGAAGATCAATATGAGTTCGTTTCAATTCAGTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_98238.p1 GENE.S_Transcript_98238~~S_Transcript_98238.p1 ORF type:5prime_partial len:177 (+),score=22.89 S_Transcript_98238:3-533(+)
LVVVVEPHFANNQSILNSTSHLTKLTSFNQKFSSILMAISSTSLSSSSLSRLPHHHQLHFPILSPPPRLHFHFQLHLLRTFPSLHASRRQEGDELFNESQKWNRFDFDNYRDYDDEDDEEEEEEEDRSLDLLVRFVENIFRKISKRARKAVRSVLPHAISTKLVALKINMSSFQFS*

Click here to download the sequence:
Link to NCBI Protein BLAST