Transcript Information: S_Transcript_98585.p1


Annotated TAIR IDAT5G48460.1
Annotated Gene NameActin binding Calponin Homology (CH) domain-containing protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:19636225-19639365 | Reverse length=654
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 115.766187095387
Replicate 213.03710292035
Replicate 312.43487508667
Condition 2: 8 Hour
Replicate 111.664342279523
Replicate 210.914750396957
Replicate 313.112475950943
Condition 3: 24 Hour
Replicate 16.8844481303691
Replicate 28.8594899798449
Replicate 311.617426513872


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_98585.p1 GENE.S_Transcript_98585~~S_Transcript_98585.p1 ORF type:complete len:660 (+),score=114.43,CH|PF00307.27|2.2e-15,CH|PF00307.27|6.3e-20,CH|PF00307.27|5.5e-17,CH|PF00307.27|8.3e-12,CAMSAP_CH|PF11971.4|0.017,CAMSAP_CH|PF11971.4|9.4,CAMSAP_CH|PF11971.4|0.067,CAMSAP_CH|PF11971.4|5.6,CH_2|PF06294.7|2.4e+03,CH_2|PF06294.7|53,CH_2|PF06294.7|0.21,CH_2|PF06294.7|1.4 S_Transcript_98585:198-2177(+)
ATGGCTATGGCAGGTTACGTAGGTATTCTGGTATCAGATCCATGGCTTCAGAATCAGTTCACTCAAGTCGAGCTTCGCAGCTTGAAATCTCAGTACCATACGATGAGGAGAGAGAGTGGACCTCTCAATCTAGCCGATTTGCCGTTAAAGATGTCCAACCTCAAGGTCGTCGGTGAAAACCTAACTGAACAAGAGAGAGAATCGTTTCTTCGCTCTTCGTATCAGAACTTGAATGATGAGGTCGATTTTGAGCTCTTTCTTCGGGTGTATTTACAACTGCATGCACACGCAAGTTCAAAAATGGGCAGTCCAGCGAAGAACTCATCAGCATTTCTCAAAGCTGCTACTACTACATTGCTTCACACAATTAGCGAGTCTGAAAAATCATCTTATGTCACACACATCAACAATTATCTCGGAGAAGACAAGTTCTTGAGGCAATACCTTCCTATAGATCCTTCAACCAATGATCTGTTTGAGATTGTGAAGGATGGCGTTCTTCTCTGTAAGCTTATCAACGTGGCGGTTCCTGGGACAATTGATGAACGCGCTATTAACATGAAGAGGATGCTCAACCCTTGGGAGAGGAATGAAAACCACACTCTATGCCTTAACTCAGCAAAGGCTATAGGGTGTACAGTGGTTAACATTGGAACTCAAGATTTTATCGAAGGAAGACGTCATCTTGTGTTTGGATTAATTGCGCAAATCATAAAGATACAACTTTTGGCTGACCTCAATTTAAAGAAAACACCTCAATTGGTTGAGCTGGTGAATAGTAGCGAGGATGCAGAAGAGTTGATGAGTCTTCCACCAGAAAAGATTTTGCTGAGATGGATGAACTTCCAACTTAAAAAGGCTGGATACAAGAAAGTTGTGACGAACTTCTCCTCTGATATTAAGGATGGAGAAGCTTATGCTCATCTCTTAAATGTTCTTGCTCCAGAACATAAAAATCCAAAGACATTGACTGTAAAAGATCCCCTCCACAGAGCAAAATTAATACTTGAACATGCTGACAAGATGGGATGTAAAAGATATTTGACAGCAAAGGACATAGTAGAAGGTTCACCCAATCTCAACCTCGCATTCGTTGCACACATATTTCAGCATAGGAATGGGCTGTCTACTCAAACCAAGCAGATATCTTTTCTAGAAACTTCTCCTGATGATGCTCAAGTTTCGCGAGAAGAAAGAGCTTTTCGCTTTTGGCTAAACAGTCTTGGTAATTCAACATGCATTGACAATGTATTTGAGGATCTTAGAGATGGATGGATTCTCCTAGAGACACTAGACAAGGTGTCACCAGGCATTGTCAATTGGAAGGTTGCTAGCAAGCCACCAATCAAGATGCCATTCAAGAAAGTTGAGAACTGTAATCAAGTAGTAAAGCTTGGGAAACAATTGAAGTTTTCCTTGGTCAATATTGCAGGAAATGATATTGTGCAAGGAAATAAAAAATTGATATTAGCATACTTGTGGCAATTGATGCGGTGTAACATGATCCAACTACTAAAGAATTTGAGATACCATTCGCATGGGAAGGAAATCAATGATGCTGATATTCTAGAATGGGCTAACACTCTAGTGAAGAACTCTGGAGGGCAGTCATGCATGAAAAGTTTCAAGGACAAGAGTTTGTCAGGTGGTATGTTTTTCCTTGAGCTTCTCAGTGCAGTGCAACCTAGAGTAGTGAACTGGAGTCTCGTTACAAAGGGAAAAAGTGATGAGGAGAAGAAGATGAATGCCTCATACATCATTAGTGTAGCACGGAAACTTGGGTGTTCAATATTTCTGCTTCCTGAAGACATTACTGAGGTCAACCAAAAGATGATCTTGACATTAACAGCTAGCATAATGTATTGGTTCTTGAATCAACCTGTTGAAGAGAAGTCATCTGGTTCATCAGATAGTGAGAACGGGAGCCAATCTGAAACGACAACCCTGGATGACACTGCATCCGAATCATCATTAGAGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_98585.p1 GENE.S_Transcript_98585~~S_Transcript_98585.p1 ORF type:complete len:660 (+),score=114.43,CH|PF00307.27|2.2e-15,CH|PF00307.27|6.3e-20,CH|PF00307.27|5.5e-17,CH|PF00307.27|8.3e-12,CAMSAP_CH|PF11971.4|0.017,CAMSAP_CH|PF11971.4|9.4,CAMSAP_CH|PF11971.4|0.067,CAMSAP_CH|PF11971.4|5.6,CH_2|PF06294.7|2.4e+03,CH_2|PF06294.7|53,CH_2|PF06294.7|0.21,CH_2|PF06294.7|1.4 S_Transcript_98585:198-2177(+)
MAMAGYVGILVSDPWLQNQFTQVELRSLKSQYHTMRRESGPLNLADLPLKMSNLKVVGENLTEQERESFLRSSYQNLNDEVDFELFLRVYLQLHAHASSKMGSPAKNSSAFLKAATTTLLHTISESEKSSYVTHINNYLGEDKFLRQYLPIDPSTNDLFEIVKDGVLLCKLINVAVPGTIDERAINMKRMLNPWERNENHTLCLNSAKAIGCTVVNIGTQDFIEGRRHLVFGLIAQIIKIQLLADLNLKKTPQLVELVNSSEDAEELMSLPPEKILLRWMNFQLKKAGYKKVVTNFSSDIKDGEAYAHLLNVLAPEHKNPKTLTVKDPLHRAKLILEHADKMGCKRYLTAKDIVEGSPNLNLAFVAHIFQHRNGLSTQTKQISFLETSPDDAQVSREERAFRFWLNSLGNSTCIDNVFEDLRDGWILLETLDKVSPGIVNWKVASKPPIKMPFKKVENCNQVVKLGKQLKFSLVNIAGNDIVQGNKKLILAYLWQLMRCNMIQLLKNLRYHSHGKEINDADILEWANTLVKNSGGQSCMKSFKDKSLSGGMFFLELLSAVQPRVVNWSLVTKGKSDEEKKMNASYIISVARKLGCSIFLLPEDITEVNQKMILTLTASIMYWFLNQPVEEKSSGSSDSENGSQSETTTLDDTASESSLE*

Click here to download the sequence:
Link to NCBI Protein BLAST