Transcript Information: S_Transcript_98695.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value2E-25
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.095558352729553
Replicate 20.07922007022447
Replicate 30.033110836774866
Condition 2: 8 Hour
Replicate 10.038286158558587
Replicate 20
Replicate 30
Condition 3: 24 Hour
Replicate 10
Replicate 20.040689069257356
Replicate 30.045281946867354


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_98695.p1 GENE.S_Transcript_98695~~S_Transcript_98695.p1 ORF type:complete len:557 (-),score=115.34,UBN2_3|PF14244.2|1.8e-39,Retrotrans_gag|PF03732.13|1e-08 S_Transcript_98695:2778-4448(-)
ATGGCTGCTGACTCTAGTAGTTCTTCTGGTTCTACAGTCTTGGATACTTCGGATCCTTTGTACCTTCACCCTGCAGATCATCCCGGATTGGTGCTGGTTTCTAGTTGTTTTGATGGAAGAGGATATGGTGCCTGGAAAAGGGCTTTAATGATTGCTTTGTCTGCTAAAAACAAAATCTGCTTAAGTGATGGTACTTCTATTAGGCCAGCTGCTAATGCTCCTGATTTGAGGCAATGGGAGAGGTGCAATGATATGGTCATTTCATGGCTATTAAATTCTTTAAGCAAAGACATAGCTGAGAGTGTTCTGTACAATACTACTGCAAGAGAAATTTGGATTGAATTAGAAGACAGGTTTGGGAAGTGCAATGGTGCTCAACTTTATCATATGCAGTCTGATGTGAATAATCTGTCTCAAGGTGGTTCTGATATTGCCACTTATTACACAAGGGCCAAGAGGCTCTGGGATGAGTTGAGTACTGTGGATGCATTGCCAGTGTGCACTTGTGGAGCAGCTCAACAGTTTGCTAAAAGAGAACAGGACAGAAAACTTATCCAGTTTCTTATGGGACTAAATGAGGATTATAAAACAGCAAGAGGAAATATCTTGATGATGCAACCACTTCCTAGTCTGGCTGTGGCCTATTCCTTACTCACTCAAGATCAGGAACAGAAAGAAACACCTACTCCTATCAGTTCTTTTACTGAATCAGCAGCCATGTACTCCAGTTCTCAGAGGAACTTTCAATCTCAGTATCATGTTCAAGGTTTTAAGGGAAGATCTGATAACAAACAACCTGATAACAGTGTGAGATCCAAATTCTTTTGTACTTTCTGTAAAAGGAATGGTCACACAGAAGACAGGTGTTGGAAGAAGAATGGATATCCATCTAATCACCCTCTACACAAAGGAAACAAAGGAAAGAGAGTTGCTGCTTCTGTGCATTCTCATGTGGATCAAAATATCTCTAACTCTCATGCTGAACATGATATTTTTGCCACCTTGACACCTGATCAATGCAGTCAGATGATGATTGCTTTACAGATTAAAATGAGCAATGCTGGAGGATTATCTGGAGGTTCTAATAGCAGTGGCAATACTGCTCATACAGATGCTGCCTTTGCTAACTTTGCAGGTAAAGGTATCTGTTCATCTTCATATGTGGTTGACAATTGCACATGTTTCTCATGTTTAACTGCTGGCAAATTCTGGATCATTGACACAGGTGCTAATGATCACATGTGTCATGATTCTTCTCTTTTCCTCCACAAAAATAGCCTGCCTAATGCCTTTTCTGTTACATTGCCTAATGGACATGTCTTGATGGTTCATGAGTCTGGTGATGTACTAATCCAGCATGATATTATCTTGCAAAATGTCTTGTATATTCCAAATTTTAAATACAATTTACTATCTGTTGGTAAATTGTCTGAGCAATTAGCTTGTTCTGTCACATTTACCAAAGATTCTTGCCTTTTGCAGGGCCCTTCAATGAAGAGGCCACTGGATCTTGGCAAAGTGCAAGGCAATCTTTACATTCTGCCTGTCAGTGATTGTTCTCTCAACACAAACACAAATAGCTCCCCTGTTACAAATGTTTCTACTGTAATGAATAACAATTCCTGTAATGAATTAGCATGTAATACTGTTTTAGATGCTGTGAAATCTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_98695.p1 GENE.S_Transcript_98695~~S_Transcript_98695.p1 ORF type:complete len:557 (-),score=115.34,UBN2_3|PF14244.2|1.8e-39,Retrotrans_gag|PF03732.13|1e-08 S_Transcript_98695:2778-4448(-)
MAADSSSSSGSTVLDTSDPLYLHPADHPGLVLVSSCFDGRGYGAWKRALMIALSAKNKICLSDGTSIRPAANAPDLRQWERCNDMVISWLLNSLSKDIAESVLYNTTAREIWIELEDRFGKCNGAQLYHMQSDVNNLSQGGSDIATYYTRAKRLWDELSTVDALPVCTCGAAQQFAKREQDRKLIQFLMGLNEDYKTARGNILMMQPLPSLAVAYSLLTQDQEQKETPTPISSFTESAAMYSSSQRNFQSQYHVQGFKGRSDNKQPDNSVRSKFFCTFCKRNGHTEDRCWKKNGYPSNHPLHKGNKGKRVAASVHSHVDQNISNSHAEHDIFATLTPDQCSQMMIALQIKMSNAGGLSGGSNSSGNTAHTDAAFANFAGKGICSSSYVVDNCTCFSCLTAGKFWIIDTGANDHMCHDSSLFLHKNSLPNAFSVTLPNGHVLMVHESGDVLIQHDIILQNVLYIPNFKYNLLSVGKLSEQLACSVTFTKDSCLLQGPSMKRPLDLGKVQGNLYILPVSDCSLNTNTNSSPVTNVSTVMNNNSCNELACNTVLDAVKS*

Click here to download the sequence:
Link to NCBI Protein BLAST