Transcript Information: S_Transcript_99493.p1


Annotated TAIR IDAT5G50920.1
Annotated Gene NameCLPC Homologue 1
Annotated Gene Symbol(s)CLPC, ATHSP93-V, HSP93-V, DCA1, CLPC1
Annotation TypeOrtholog
Chromosome Positionchr5:20715710-20719800 | Reverse length=929
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.5773200325692
Replicate 22.6408126782662
Replicate 32.2275774812619
Condition 2: 8 Hour
Replicate 11.8796045872555
Replicate 21.9474949849599
Replicate 31.8555688883553
Condition 3: 24 Hour
Replicate 13.2802980649641
Replicate 23.3046254093912
Replicate 33.512972452508


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_99493.p1 GENE.S_Transcript_99493~~S_Transcript_99493.p1 ORF type:complete len:919 (+),score=215.42,AAA_2|PF07724.10|0.99,AAA_2|PF07724.10|2.2e+03,AAA_2|PF07724.10|2.2e-53,Clp_N|PF02861.16|6.1e-16,Clp_N|PF02861.16|1.1e-17,ClpB_D2-small|PF10431.5|1.1e-24,AAA|PF00004.25|1.9e-15,AAA|PF00004.25|5.1e-06,AAA_5|PF07728.10|2.2e-05,AAA_5|PF07728.10|2.4e+03,AAA_5|PF07728.10|1.3e-11,AAA_16|PF13191.2|3.3e-05,AAA_16|PF13191.2|1.5e+02,AAA_16|PF13191.2|0.054,AAA_16|PF13191.2|7e+03,AAA_17|PF13207.2|0.076,AAA_17|PF13207.2|9.4e-05,Sigma54_activat|PF00158.22|0.067,Sigma54_activat|PF00158.22|0.00011,UVR|PF02151.15|6.1e-09,IstB_IS21|PF01695.13|0.0026,IstB_IS21|PF01695.13|1.2,AAA_22|PF13401.2|4.3e+02,AAA_22|PF13401.2|0.31,AAA_22|PF13401.2|0.94,AAA_18|PF13238.2|0.012,AAA_18|PF13238.2|2.5e+03,AAA_18|PF13238.2|1,AAA_14|PF13173.2|0.063,AAA_14|PF13173.2|0.48 S_Transcript_99493:83-2839(+)
ATGGCTAGTTCGGTATCACATTTGATTAAGATACCTGTTTCATTTCGCTGTCAAAAGAGGAGTCAATTTCAAGGCTCTGGCAAAGGCAGAAGCTCTGTAAAAATGTTGGCCGCTACACAGGCACCTAGATTAAGACTTCAAACTTTTTCGGGGTTGCGAGCAGGTACTACCCTTTTGGGCTCTTTGGGATCCTCCAGTGCCACAGATTTTTATTTGAAGATAGATGATGCCCTATCAGTTCGTAAAGGGACAGCAACAAGGGGTGTTGTTACAGCAATGTTTGAACGTTTTACTGAGAAAGCTATCAAAGTTATTCTGGTTGCACAAGAGGAGGCAAGGCGTTTAGGTCACAATGCAGTTGGCACTGAGCAAATCTTGCTAGGCCTTATAGGCGAAGGCACAGGCATTGCTGCGAAAGTTCTGAAGTCTGCAGGATTGAATATGAAAGATGTGCGTATTGAAGTTGAGAAGATAATTGGTAGGGGTGGCGGATTTATCTCTGTCGAGATTCCCTTTAGTCCTCGTGCCAAACGTGTTTTGGAACTCTCACTGGAAGAGGCACGCCAGCTTGGTCAAAACTATATTGGATCTGAACATCTGCTGCTGGGATTGCTTAGTGAAGGTGAAGGTGTAGCTGCTCGTGTCCTTGAGTCTTTAGGTGCTGATCCAAATGATATCCGTAAACAGGTCATACACATGATGGGTGAGAAAAAGGAGCCTGTTCTACATGTAGGTGATGCCCCTAACGGCAGTATGCCGACACTCCAAGAGTATGGCACAAATTTGACAATGGCGGCACAAGAGGGAAAATTAGATCCTGTTGTTGGAAGGCAGGAGCAAATAGAGCGTGTTATCCAAATACTTAGCCGTCGAGCCAAAAATAACCCTTGTCTCATTGGGCAACCTGGTGTTGGTAAAACATCAATTGCCGAGGGTCTAGCTCAAAGAATTGCTAGTGGTGACGTTCCAGAGACAATTGAAGGCAAGCAGGTTATAACTCTTGATATGAGTCGTCTTGTTGCTGGGACTAAATACCGGGGAGAATTTGAGGGTAGACTGAAAAAGCTGATGGAAGAAATCAGAGAGACAAAGGAGGTAATTCTTTTCATAGATGAATTGCATACTCTGGTTGGGGCTGGAGCAGCTGAGGGGGCAATTGATGCTGCAAACATCTTAAAACCAGCTCTTGCAAGGGGTGAGTTACAGTGTGTTGGAGCCACAACACTTGATGAATACAGACAACACATTGAGAAGGACCCTGCACTGGAAAGAAGATTTCAGCCTGTGGTGGTGCCCGAACCTACAGTAGATGAAGCAGTACAGATTCTGAAAGGACTACGTGAGCGATATGAGATTCACCACAAGCTCCGCTATACAGATGAAGCACTAGTTGCAGCAGCAGAACTGTCATCTCAGTTCATCAGTGACAGATTTCTTCCTGATAAAGCTATTGATCTTATCGATGAAGCTGGTTCACGGGTGCGGCTGCGAGATGCCGAGCTCCCCGAAGAAGTGAAAGAACTTGAGAGACAGGTGAGACAGATCACCAAGGAGAAGAATGATGCCATCCGTAGCCAAGATTTTGAAAAGGCTGCTGAGTTGCGGGACCAGGAAACGGACATAAAAGTACAAATTTCTGCTCTCATAAGCAAGAGCAAGGAATTGAAAGAGGCGGAGACAGATGATGTTGGTCCAGTAGTAACAGATGTGGACATTAGGCACATAGTTTCAACTTGGACTGGCATACCAGTTCAGAAGGTATCTTCTGACGAGTCTGATCGTCTTCTGAGAATGGAAGAGACCCTCCATGGCAGAGTTATTGGTCAAGATGAAGCTGTTAAAGCCATCAGCTCTGCCATCCGCCGTGCTCGTGTTGGTCTCAAGAACCCCAACCGTCCGATAGCTAGTTTCATCTTCTCAGGCCCAACTGGCGTAGGAAAGTCCGAACTTGCGAAAACCTTAGCTGCTTATTACTTTGGGTCAGAAGATGCTATGGTCCGACTTGATATGAGTGAGTTCATGGAGAGACACACTGTTGCTAAGCTAATCGGATCCCCACCAGGATATGTCGGTTATACTGAGGGGGGCCAGTTAACTGAGGCTGTTAGGCGCCGCCCTTACACATTGGTACTTTTTGATGAGATTGAGAAAGCTCATCCTGATGTCTTCAATATGATGCTTCAGATTCTTGAAGATGGGAGATTGACAGACAGCAAGGGCAGGACGGTAAACTTCAAGAACACCCTTCTAATAATGACCTCAAATATTGGAAGCAGCGTGATTGAGAAGGGTGGCCGTAGTATAGGATTTGATTTATCTTATAACGACCATGATAACAGTTATAACCGTATTAAGAACCTAGTGGTTGAGGAGCTTAAGCAATATTTCAAACCAGAGTTTCTGAACAGATTAGATGACATGATTGTCTTCAGGCAGCTTACGAAGCTCGAAGTCAAGGAAATTGCTGATATCATGTTCAAGGAAGTTTTCAAGAGACTCCAAACAAAGGGTATCGAGCTTCAGGTGACTGAGAGGTTTAAGGATAGGGTAGTGGATGAAGGTTACAACCCTAGTTATGGAGCAAGACCATTGAGGAGGGCTATCATGAGGCTTTTGGAGGATAGCATGGCTGAAAAGATGCTTTCAGGCGAAATAAAAGAAGGCGATTCAGTTATTCTTGATGCTGATTCCGATGGGGATGTCATTGCTCTCAATGGTAATCGTTCCAGTGCTTCTCCTGACCTTCTTCCTGTGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_99493.p1 GENE.S_Transcript_99493~~S_Transcript_99493.p1 ORF type:complete len:919 (+),score=215.42,AAA_2|PF07724.10|0.99,AAA_2|PF07724.10|2.2e+03,AAA_2|PF07724.10|2.2e-53,Clp_N|PF02861.16|6.1e-16,Clp_N|PF02861.16|1.1e-17,ClpB_D2-small|PF10431.5|1.1e-24,AAA|PF00004.25|1.9e-15,AAA|PF00004.25|5.1e-06,AAA_5|PF07728.10|2.2e-05,AAA_5|PF07728.10|2.4e+03,AAA_5|PF07728.10|1.3e-11,AAA_16|PF13191.2|3.3e-05,AAA_16|PF13191.2|1.5e+02,AAA_16|PF13191.2|0.054,AAA_16|PF13191.2|7e+03,AAA_17|PF13207.2|0.076,AAA_17|PF13207.2|9.4e-05,Sigma54_activat|PF00158.22|0.067,Sigma54_activat|PF00158.22|0.00011,UVR|PF02151.15|6.1e-09,IstB_IS21|PF01695.13|0.0026,IstB_IS21|PF01695.13|1.2,AAA_22|PF13401.2|4.3e+02,AAA_22|PF13401.2|0.31,AAA_22|PF13401.2|0.94,AAA_18|PF13238.2|0.012,AAA_18|PF13238.2|2.5e+03,AAA_18|PF13238.2|1,AAA_14|PF13173.2|0.063,AAA_14|PF13173.2|0.48 S_Transcript_99493:83-2839(+)
MASSVSHLIKIPVSFRCQKRSQFQGSGKGRSSVKMLAATQAPRLRLQTFSGLRAGTTLLGSLGSSSATDFYLKIDDALSVRKGTATRGVVTAMFERFTEKAIKVILVAQEEARRLGHNAVGTEQILLGLIGEGTGIAAKVLKSAGLNMKDVRIEVEKIIGRGGGFISVEIPFSPRAKRVLELSLEEARQLGQNYIGSEHLLLGLLSEGEGVAARVLESLGADPNDIRKQVIHMMGEKKEPVLHVGDAPNGSMPTLQEYGTNLTMAAQEGKLDPVVGRQEQIERVIQILSRRAKNNPCLIGQPGVGKTSIAEGLAQRIASGDVPETIEGKQVITLDMSRLVAGTKYRGEFEGRLKKLMEEIRETKEVILFIDELHTLVGAGAAEGAIDAANILKPALARGELQCVGATTLDEYRQHIEKDPALERRFQPVVVPEPTVDEAVQILKGLRERYEIHHKLRYTDEALVAAAELSSQFISDRFLPDKAIDLIDEAGSRVRLRDAELPEEVKELERQVRQITKEKNDAIRSQDFEKAAELRDQETDIKVQISALISKSKELKEAETDDVGPVVTDVDIRHIVSTWTGIPVQKVSSDESDRLLRMEETLHGRVIGQDEAVKAISSAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKTLAAYYFGSEDAMVRLDMSEFMERHTVAKLIGSPPGYVGYTEGGQLTEAVRRRPYTLVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVNFKNTLLIMTSNIGSSVIEKGGRSIGFDLSYNDHDNSYNRIKNLVVEELKQYFKPEFLNRLDDMIVFRQLTKLEVKEIADIMFKEVFKRLQTKGIELQVTERFKDRVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLSGEIKEGDSVILDADSDGDVIALNGNRSSASPDLLPV*

Click here to download the sequence:
Link to NCBI Protein BLAST