IMPPAT Phytochemical information: 
Senecionine N-oxide

Senecionine N-oxide
Summary

SMILES: C/C=C\1/C[C@@H](C)[C@@](C)(O)C(=O)OCC2=CC[N+]3([C@H]2[C@H](OC1=O)CC3)[O-]
InChI: InChI=1S/C18H25NO6/c1-4-12-9-11(2)18(3,22)17(21)24-10-13-5-7-19(23)8-6-14(15(13)19)25-16(12)20/h4-5,11,14-15,22H,6-10H2,1-3H3/b12-4-/t11-,14-,15-,18-,19?/m1/s1
InChIKey: PLGBHVNNYDZWGZ-GPUZEBNTSA-N
DeepSMILES: C/C=C/C[C@@H]C)[C@@]C)O)C=O)OCC=CC[N+][C@H]5[C@H]OC/%15=O)))CC5))))[O-]
Scaffold Graph/Node/Bond level: C=C1CCCC(=O)OCC2=CC[NH+]3CCC(OC1=O)C23
Scaffold Graph/Node level: CC1CCCC(O)OCC2CCN3CCC(OC1O)C23
Scaffold Graph level: CC1CCCC(C)C(C)CC2CCC3CCC(CC1)C32
Functional groups: C/C=C(/C)C(=O)OC; CO; COC(=O)C; CC=C(C)C; C[N+]([O-])(C)C
Chemical classification
ClassyFire Kingdom: Organic compounds
ClassyFire Superclass: Alkaloids and derivatives
Synonymous chemical names:
senecionine n-oxide
External chemical identifiers:
CID:CID_5380876; ChEMBL:CHEMBL471683; ChEBI:CHEBI:52070; ZINC:ZINC000004963259; MolPort-046-153-831
Chemical structure download


Senecionine N-oxide
Physicochemical properties
Property name Tool Property value
Molecular weight (g/mol) RDKit 351.4
Log P RDKit 1.21
Topological polar surface area (Å2) RDKit 95.89
Number of hydrogen bond acceptors RDKit 6
Number of hydrogen bond donors RDKit 1
Number of carbon atoms RDKit 18
Number of heavy atoms RDKit 25
Number of heteroatoms RDKit 7
Number of nitrogen atoms RDKit 1
Number of sulfur atoms RDKit 0
Number of chiral carbon atoms RDKit 4
Stereochemical complexity RDKit 0.22
Number of sp hybridized carbon atoms RDKit 0
Number of sp2 hybridized carbon atoms RDKit 6
Number of sp3 hybridized carbon atoms RDKit 12
Shape complexity RDKit 0.67
Number of rotatable bonds RDKit 0
Number of aliphatic carbocycles RDKit 0
Number of aliphatic heterocycles RDKit 3
Number of aliphatic rings RDKit 3
Number of aromatic carbocycles RDKit 0
Number of aromatic heterocycles RDKit 0
Number of aromatic rings RDKit 0
Total number of rings RDKit 3
Number of saturated carbocycles RDKit 0
Number of saturated heterocycles RDKit 2
Number of saturated rings RDKit 2
Number of Smallest Set of Smallest Rings (SSSR) RDKit 3


Senecionine N-oxide
Drug-likeness properties
Property nameToolProperty value
Number of Lipinski’s rule of 5 violations RDKit 0
Lipinski’s rule of 5 filter RDKit Passed
Number of Ghose filter violations RDKit 0
Ghose filter RDKit Passed
Veber filter RDKit Good
Pfizer 3/75 filter RDKit Good
GSK 4/400 filter RDKit Good
Weighted quantitative estimate of drug-likeness (QEDw) score RDKit 0.231637


Senecionine N-oxide
ADME properties
Property nameToolProperty value
Bioavailability score SwissADME 0.55
Solubility class [ESOL] SwissADME Soluble
Solubility class [Silicos-IT] SwissADME Soluble
Blood Brain Barrier permeation SwissADME No
Gastrointestinal absorption SwissADME High
Log Kp (Skin permeation, cm/s) SwissADME -8.01
Number of PAINS structural alerts SwissADME 0
Number of Brenk structural alerts SwissADME 4
CYP1A2 inhibitor SwissADME No
CYP2C19 inhibitor SwissADME No
CYP2C9 inhibitor SwissADME No
CYP2D6 inhibitor SwissADME No
CYP3A4 inhibitor SwissADME No
P-glycoprotein substrate SwissADME Yes