IMPPAT Phytochemical information: 
Rhynchophylline
Rhynchophylline
Summary

SMILES: CO/C=C(\[C@H]1C[C@@H]2N(C[C@@H]1CC)CC[C@@]12C(=O)Nc2c1cccc2)/C(=O)OC
InChI: InChI=1S/C22H28N2O4/c1-4-14-12-24-10-9-22(17-7-5-6-8-18(17)23-21(22)26)19(24)11-15(14)16(13-27-2)20(25)28-3/h5-8,13-15,19H,4,9-12H2,1-3H3,(H,23,26)/b16-13+/t14-,15-,19-,22+/m0/s1
InChIKey: DAXYUDFNWXHGBE-KAXDATADSA-N
DeepSMILES: CO/C=C\[C@H]C[C@@H]NC[C@@H]6CC))))CC[C@]5C=O)Ncc5cccc6)))))))))))))))/C=O)OC
Scaffold Graph/Node/Bond level: O=C1Nc2ccccc2C12CCN1CCCCC12
Scaffold Graph/Node level: OC1NC2CCCCC2C12CCN1CCCCC12
Scaffold Graph level: CC1CC2CCCCC2C12CCC1CCCCC12
Functional groups: CO/C=C(\C)C(=O)OC; CN(C)C; cNC(=O)C
Chemical classification
ClassyFire Kingdom: Organic compounds
ClassyFire Superclass: Organoheterocyclic compounds
ClassyFire Class: Indolizidines
NP Classifier Biosynthetic pathway: Alkaloids
NP Classifier Superclass: Tryptophan alkaloids
NP Classifier Class: Corynanthe type|Simple oxindole alkaloids
Synonymous chemical names:
Rhynchophylline, rhynchophylline
External chemical identifiers:
CID:CID_5281408; ChEMBL:CHEMBL519266; ChEBI:CHEBI:70069; ZINC:ZINC000004097968; FDASRS:46BQ79VJ8D; SureChEMBL:SCHEMBL2047380; MolPort-003-986-874
Chemical structure download
2D:2D MOL2D MOL22D SDF
3D:3D MOL3D MOL23D SDF3D PDB3D PDBQT
Rhynchophylline
Physicochemical properties
Property name Tool Property value
Molecular weight (g/mol) RDKit 384.48
Log P RDKit 2.7
Topological polar surface area (Å2) RDKit 67.87
Number of hydrogen bond acceptors RDKit 5
Number of hydrogen bond donors RDKit 1
Number of carbon atoms RDKit 22
Number of heavy atoms RDKit 28
Number of heteroatoms RDKit 6
Number of nitrogen atoms RDKit 2
Number of sulfur atoms RDKit 0
Number of chiral carbon atoms RDKit 4
Stereochemical complexity RDKit 0.18
Number of sp hybridized carbon atoms RDKit 0
Number of sp2 hybridized carbon atoms RDKit 10
Number of sp3 hybridized carbon atoms RDKit 12
Shape complexity RDKit 0.55
Number of rotatable bonds RDKit 4
Number of aliphatic carbocycles RDKit 0
Number of aliphatic heterocycles RDKit 3
Number of aliphatic rings RDKit 3
Number of aromatic carbocycles RDKit 1
Number of aromatic heterocycles RDKit 0
Number of aromatic rings RDKit 1
Total number of rings RDKit 4
Number of saturated carbocycles RDKit 0
Number of saturated heterocycles RDKit 2
Number of saturated rings RDKit 2
Number of Smallest Set of Smallest Rings (SSSR) RDKit 4
Rhynchophylline
Drug-likeness properties
Property nameToolProperty value
Number of Lipinski’s rule of 5 violations RDKit 0
Lipinski’s rule of 5 filter RDKit Passed
Number of Ghose filter violations RDKit 0
Ghose filter RDKit Passed
Veber filter RDKit Good
Pfizer 3/75 filter RDKit Bad
GSK 4/400 filter RDKit Good
Weighted quantitative estimate of drug-likeness (QEDw) score RDKit 0.491134
Rhynchophylline
ADME properties
Property nameToolProperty value
Bioavailability score SwissADME 0.55
Solubility class [ESOL] SwissADME Soluble
Solubility class [Silicos-IT] SwissADME Moderately soluble
Blood Brain Barrier permeation SwissADME Yes
Gastrointestinal absorption SwissADME High
Log Kp (Skin permeation, cm/s) SwissADME -7.01
Number of PAINS structural alerts SwissADME 0
Number of Brenk structural alerts SwissADME 2
CYP1A2 inhibitor SwissADME No
CYP2C19 inhibitor SwissADME No
CYP2C9 inhibitor SwissADME No
CYP2D6 inhibitor SwissADME Yes
CYP3A4 inhibitor SwissADME Yes
P-glycoprotein substrate SwissADME No
Rhynchophylline
Human target proteins
Protein identifierHGNC symbolCombined score from STITCH database
ENSP00000279593819
ENSP00000360608GRIN1800
The human target proteins were predicted using STITCH, a database of Chemical-Protein interaction networks.