IMPPAT Phytochemical information: 
Vincristine

Vincristine
Summary

SMILES: O=CN1c2cc(OC)c(cc2[C@]23[C@@H]1[C@@](O)(C(=O)OC)[C@H](OC(=O)C)[C@]1([C@@H]3N(CC2)CC=C1)CC)[C@]1(C[C@@H]2CN(CCc3c1[nH]c1c3cccc1)C[C@](C2)(O)CC)C(=O)OC
InChI: InChI=1S/C46H56N4O10/c1-7-42(55)22-28-23-45(40(53)58-5,36-30(14-18-48(24-28)25-42)29-12-9-10-13-33(29)47-36)32-20-31-34(21-35(32)57-4)50(26-51)38-44(31)16-19-49-17-11-15-43(8-2,37(44)49)39(60-27(3)52)46(38,56)41(54)59-6/h9-13,15,20-21,26,28,37-39,47,55-56H,7-8,14,16-19,22-25H2,1-6H3/t28-,37+,38-,39-,42+,43-,44-,45+,46+/m1/s1
InChIKey: OGWKCGZFUXNPDA-XQKSVPLYSA-N
DeepSMILES: O=CNcccOC))ccc6[C@@][C@@H]9[C@@]O)C=O)OC)))[C@H]OC=O)C)))[C@][C@@H]6NCC9))CC=C6)))))CC)))))))))[C@]C[C@@H]CNCCcc9[nH]cc5cccc6)))))))))))C[C@]C6)O)CC))))))))C=O)OC
Scaffold Graph/Node/Bond level: C1=CC2CCC3Nc4ccc(C5CC6CCCN(CCc7c5[nH]c5ccccc75)C6)cc4C34CCN(C1)C24
Scaffold Graph/Node level: C1CCC2C(C1)NC1C(C3CCC4NC5CCC6CCCN7CCC5(C4C3)C67)CC3CCCN(CCC21)C3
Scaffold Graph level: C1CC2CCC3C4CCCCC4CC3C(C3CCC4CC5CCC6CCCC7CCC5(C4C3)C67)CC(C1)C2
Functional groups: CC(=O)OC; CC=CC; CN(C)C; CO; COC(C)=O; cN(C)C=O; cOC; c[nH]c
Chemical classification
ClassyFire Kingdom: Organic compounds
ClassyFire Superclass: Alkaloids and derivatives
ClassyFire Class: Vinca alkaloids
NP Classifier Biosynthetic pathway: Alkaloids
NP Classifier Superclass: Tryptophan alkaloids
NP Classifier Class: Aspidosperma type|Aspidosperma-Iboga hybrid type (Vinca alkaloids)
Synonymous chemical names:
leurocristine, vincristine, vincristine (vcr)
External chemical identifiers:
CID:5978; ChEMBL:CHEMBL90555; ChEBI:28445; ZINC:ZINC000085432549; SureChEMBL:SCHEMBL3709
Chemical structure download


Vincristine
Physicochemical properties
Property name Tool Property value
Molecular weight (g/mol) RDKit 0
Log P RDKit 0
Topological polar surface area (Å2) RDKit
Number of hydrogen bond acceptors RDKit
Number of hydrogen bond donors RDKit
Number of carbon atoms RDKit
Number of heavy atoms RDKit
Number of heteroatoms RDKit
Number of nitrogen atoms RDKit
Number of sulfur atoms RDKit
Number of chiral carbon atoms RDKit
Stereochemical complexity RDKit 0
Number of sp hybridized carbon atoms RDKit
Number of sp2 hybridized carbon atoms RDKit
Number of sp3 hybridized carbon atoms RDKit
Shape complexity RDKit
Number of rotatable bonds RDKit
Number of aliphatic carbocycles RDKit
Number of aliphatic heterocycles RDKit
Number of aliphatic rings RDKit
Number of aromatic carbocycles RDKit
Number of aromatic heterocycles RDKit
Number of aromatic rings RDKit
Total number of rings RDKit
Number of saturated carbocycles RDKit
Number of saturated heterocycles RDKit
Number of saturated rings RDKit
Number of Smallest Set of Smallest Rings (SSSR) RDKit


Vincristine
Drug-likeness properties
Property nameToolProperty value
Number of Lipinski’s rule of 5 violations RDKit 2
Lipinski’s rule of 5 RDKit Failed
Number of Ghose rule violations RDKit 3
Ghose rule RDKit Failed
Veber rule RDKit Bad
Egan rule RDKit Bad
GSK 4/400 rule RDKit Bad
Pfizer 3/75 rule RDKit Bad
Weighted quantitative estimate of drug-likeness (QEDw) score RDKit 0.13


Vincristine
ADMET properties
Property nameToolProperty value
Bioavailability score SwissADME 0.17
Solubility class [ESOL] SwissADME Poorly soluble
Solubility class [Silicos-IT] SwissADME Poorly soluble
Blood Brain Barrier permeation SwissADME No
Gastrointestinal absorption SwissADME Low
Log Kp (Skin permeation, cm/s) SwissADME -9.11
Number of PAINS structural alerts SwissADME 0.0
Number of Brenk structural alerts SwissADME 3.0
CYP1A2 inhibitor SwissADME No
CYP2C19 inhibitor SwissADME No
CYP2C9 inhibitor SwissADME No
CYP2D6 inhibitor SwissADME No
CYP3A4 inhibitor SwissADME Yes
P-glycoprotein substrate SwissADME Yes


Vincristine
Predicted human target proteins
Protein identifierHGNC symbolCombined score from STITCH database
ENSP00000158166CAMKK1700
ENSP00000201586SULT2B1700
ENSP00000202773RPL6700
ENSP00000206262RGS17700
ENSP00000206542OSGEP700
ENSP00000216124ARSA700
ENSP00000216211UPK3A700
ENSP00000216465GSTZ1700
ENSP00000216911AURKA727
ENSP00000222270700
ENSP00000222572PON2700
ENSP00000222982CYP3A5856
ENSP00000223095SERPINE1700
ENSP00000223795TNFSF8700
ENSP00000228682GLI1700
ENSP00000229335AICDA700
ENSP00000230124FIG4700
ENSP00000230882GHR700
ENSP00000234040PASK700
ENSP00000237612ABCG2956
ENSP00000242839ATP7B726
ENSP00000244043PTGIS700
ENSP00000245312SLC10A2700
ENSP00000245407SLC22A5700
ENSP00000248437TUBA4A872
ENSP00000248566SHFM1700
ENSP00000252321KCNA5700
ENSP00000254079PPP1R1B700
ENSP00000255078IGHMBP2700
ENSP00000256443CDK7700
ENSP00000258729IGF2BP3700
ENSP00000259457PSMB7700
ENSP00000260323UNC13C700
ENSP00000260442BCL2L10800
ENSP00000260682CYP2C9700
ENSP00000261353YPEL5700
ENSP00000261523RORA700
ENSP00000261637UTP20700
ENSP00000261693SCARB1700
ENSP00000262018SGCA700
ENSP00000262901SIM1700
ENSP00000262999UCP1700
ENSP00000263817ABCB11700
ENSP00000265136COBL700
ENSP00000265295SPDL1700
ENSP00000265371NRP1700
ENSP00000265421POLB700
ENSP00000265724ABCB1899
ENSP00000265729SRI836
ENSP00000265857GET4700
ENSP00000265944MYO3A700
ENSP00000265963GTF2H1724
ENSP00000268124POLG700
ENSP00000268854DDX52700
ENSP00000269305TP53828
ENSP00000269571ERBB2773
ENSP00000270452LILRB4700
ENSP00000272167EPHX1700
ENSP00000274026CCNA2700
ENSP00000276420DOK2722
ENSP00000276927IFNA1738
ENSP00000281043MYCN799
ENSP00000281416MFSD6700
ENSP00000284311GPR15700
ENSP00000286398SMC2700
ENSP00000286749SLC28A1700
ENSP00000286955FUT6700
ENSP00000292408FGFR4723
ENSP00000294304LRP5700
ENSP00000295488HELQ700
ENSP00000297785ALDH1A1752
ENSP00000299134SVOP700
ENSP00000299427TPP1700
ENSP00000299502SERPINB2700
ENSP00000300738RRM1700
ENSP00000301202LAIR2700
ENSP00000302111MGMT792
ENSP00000303476TLN2700
ENSP00000304736ELOVL6700
ENSP00000304811UGT2B7700
ENSP00000305372ADRB2700
ENSP00000308937PMP22824
ENSP00000310033ZNF596700
ENSP00000310842FANCI700
ENSP00000310928PPARD700
ENSP00000311469GSTM1700
ENSP00000311873EXO1700
ENSP00000315997LILRB1700
ENSP00000317905C17orf96700
ENSP00000318820TPO700
ENSP00000318867CYP8B1700
ENSP00000320634SLCO3A1700
ENSP00000325526WNT11700
ENSP00000326018PRX700
ENSP00000328228CDCA2700
ENSP00000328973TSPO746
ENSP00000329623BCL2755
ENSP00000331111ZNRD1738
ENSP00000331736SELE700
ENSP00000332449CRIP1700
ENSP00000332816PTK2B700
ENSP00000333487MAGEA2B700
ENSP00000333926ABCC5735
ENSP00000334294TCFL5700
ENSP00000335463CASC5700
ENSP00000336528NR1I2700
ENSP00000337450CYP3A7800
ENSP00000337915CYP3A4843
ENSP00000338783CHST5700
ENSP00000338796SSX2700
ENSP00000339001TUBB847
ENSP00000340820MAPT787
ENSP00000341289TUBB4B837
ENSP00000341640COL9A3700
ENSP00000342007CYP1A2700
ENSP00000343477RUNX3700
ENSP00000344456CTNNB1700
ENSP00000345728ATP7A726
ENSP00000350094QRICH1700
ENSP00000351497FCGR2B700
ENSP00000353646PLEKHG4700
ENSP00000354612PTGS1700
ENSP00000355536MTR700
ENSP00000355759PARP1734
ENSP00000357643MKI67737
ENSP00000358099RGS10700
ENSP00000359211DPYD700
ENSP00000359305TMED5700
ENSP00000359307MAGEA2700
ENSP00000359478ABCC2741
ENSP00000359783IFI44700
ENSP00000360266JUN728
ENSP00000360317CYP2C8700
ENSP00000361170MUTYH700
ENSP00000361608ABCC10733
ENSP00000362395ITM2A700
ENSP00000363079MBL2700
ENSP00000363689ID3700
ENSP00000364555ACTL8700
ENSP00000364721MAPRE1700
ENSP00000365320PAGE1700
ENSP00000366081SSX4B700
ENSP00000366083SSX4700
ENSP00000366084ABCC4769
ENSP00000366118SSX1700
ENSP00000366460PLXDC2700
ENSP00000368752PRNP700
ENSP00000369003TRPC4700
ENSP00000369218RBM17700
ENSP00000369497BRCA2700
ENSP00000371119GAGE1700
ENSP00000371127GAGE2C700
ENSP00000371554SOD3700
ENSP00000371802DAZ3700
ENSP00000373215CADPS700
ENSP00000375809ERCC2700
ENSP00000376293OSBPL6700
ENSP00000377492HMMR700
ENSP00000377914CIAPIN1700
ENSP00000378138TMEM98700
ENSP00000379330NFATC2700
ENSP00000380661CEP250700
ENSP00000381607GSTP1734
ENSP00000382342ABCC1819
ENSP00000384573DAZ1700
ENSP00000391465GAGE12I700
ENSP00000393099MAPKBP1700
ENSP00000394794PTPN13700
ENSP00000394932CDKN2A746
ENSP00000398632CD44733
ENSP00000400175RHOA843
ENSP00000401363DAZ4700
ENSP00000403396FAM126A700
ENSP00000403495LTA700
ENSP00000407375GPX1700
ENSP00000409555HERPUD1700
ENSP00000416293SLC2A1700
ENSP00000418960BRCA1722
ENSP00000419782CDK5700
ENSP00000443194NAT1700
ENSP00000449428TWF1707
ENSP00000451112NPC2700
ENSP00000452776SLC12A6700
ENSP00000457706HSPB2-C11orf52700
The human target proteins were predicted using STITCH, a database of Chemical-Protein interaction networks.