IMPPAT Phytochemical information: 
Cholesterol

Cholesterol
Summary

SMILES: CC(CCC[C@H]([C@H]1CC[C@@H]2[C@]1(C)CC[C@H]1[C@H]2CC=C2[C@]1(C)CC[C@@H](C2)O)C)C
InChI: InChI=1S/C27H46O/c1-18(2)7-6-8-19(3)23-11-12-24-22-10-9-20-17-21(28)13-15-26(20,4)25(22)14-16-27(23,24)5/h9,18-19,21-25,28H,6-8,10-17H2,1-5H3/t19-,21+,22+,23-,24+,25+,26+,27-/m1/s1
InChIKey: HVYWMOMLDIMFJA-DPAQBDIFSA-N
DeepSMILES: CCCCC[C@H][C@H]CC[C@@H][C@]5C)CC[C@H][C@H]6CC=C[C@]6C)CC[C@@H]C6)O)))))))))))))))))C)))))C
Scaffold Graph/Node/Bond level: C1=C2CCCCC2C2CCC3CCCC3C2C1
Scaffold Graph/Node level: C1CCC2C(C1)CCC1C3CCCC3CCC21
Scaffold Graph level: C1CCC2C(C1)CCC1C3CCCC3CCC21
Functional groups: CC=C(C)C; CO
Chemical classification
ClassyFire Kingdom: Organic compounds
ClassyFire Superclass: Lipids and lipid-like molecules
ClassyFire Class: Steroids and steroid derivatives
ClassyFire Subclass: Cholestane steroids
NP Classifier Biosynthetic pathway: Terpenoids
NP Classifier Superclass: Steroids
NP Classifier Class: Cholestane steroids
Synonymous chemical names:
cholest-5-en-3beta-ol, cholesterin, cholesterol, cholestrol
External chemical identifiers:
CID:5997; ChEMBL:CHEMBL112570; ChEBI:16113; ZINC:ZINC000003875383; FDASRS:97C5T2UQ7J; SureChEMBL:SCHEMBL2156; MolPort-002-506-911
Chemical structure download


Cholesterol
Physicochemical properties
Property name Tool Property value
Molecular weight (g/mol) RDKit 0
Log P RDKit 0
Topological polar surface area (Å2) RDKit
Number of hydrogen bond acceptors RDKit
Number of hydrogen bond donors RDKit
Number of carbon atoms RDKit
Number of heavy atoms RDKit
Number of heteroatoms RDKit
Number of nitrogen atoms RDKit
Number of sulfur atoms RDKit
Number of chiral carbon atoms RDKit
Stereochemical complexity RDKit 0
Number of sp hybridized carbon atoms RDKit
Number of sp2 hybridized carbon atoms RDKit
Number of sp3 hybridized carbon atoms RDKit
Shape complexity RDKit
Number of rotatable bonds RDKit
Number of aliphatic carbocycles RDKit
Number of aliphatic heterocycles RDKit
Number of aliphatic rings RDKit
Number of aromatic carbocycles RDKit
Number of aromatic heterocycles RDKit
Number of aromatic rings RDKit
Total number of rings RDKit
Number of saturated carbocycles RDKit
Number of saturated heterocycles RDKit
Number of saturated rings RDKit
Number of Smallest Set of Smallest Rings (SSSR) RDKit


Cholesterol
Drug-likeness properties
Property nameToolProperty value
Number of Lipinski’s rule of 5 violations RDKit 1
Lipinski’s rule of 5 RDKit Passed
Number of Ghose rule violations RDKit 2
Ghose rule RDKit Failed
Veber rule RDKit Good
Egan rule RDKit Bad
GSK 4/400 rule RDKit Bad
Pfizer 3/75 rule RDKit Bad
Weighted quantitative estimate of drug-likeness (QEDw) score RDKit 0.49


Cholesterol
ADMET properties
Property nameToolProperty value
Bioavailability score SwissADME 0.55
Solubility class [ESOL] SwissADME Poorly soluble
Solubility class [Silicos-IT] SwissADME Moderately soluble
Blood Brain Barrier permeation SwissADME No
Gastrointestinal absorption SwissADME Low
Log Kp (Skin permeation, cm/s) SwissADME -2.47
Number of PAINS structural alerts SwissADME 0.0
Number of Brenk structural alerts SwissADME 1.0
CYP1A2 inhibitor SwissADME No
CYP2C19 inhibitor SwissADME No
CYP2C9 inhibitor SwissADME Yes
CYP2D6 inhibitor SwissADME No
CYP3A4 inhibitor SwissADME No
P-glycoprotein substrate SwissADME No


Cholesterol
Predicted human target proteins
Protein identifierHGNC symbolCombined score from STITCH database
ENSP00000200676CETP996
ENSP00000201586SULT2B1929
ENSP00000215832MAPK1735
ENSP00000217961STS941
ENSP00000218388TIMP1837
ENSP00000219476TSC2804
ENSP00000220584FDFT1849
ENSP00000222002SULT2A1868
ENSP00000222157FGF21875
ENSP00000222381PON1863
ENSP00000222990SNX8800
ENSP00000227665APOA5952
ENSP00000227667APOC3978
ENSP00000229794MAPK14919
ENSP00000231509NR3C1769
ENSP00000232217RBP2900
ENSP00000232219RBP1910
ENSP00000233242APOB998
ENSP00000236147SELL822
ENSP00000236850APOA1997
ENSP00000240652IAPP833
ENSP00000241052CAT760
ENSP00000243077LRP1935
ENSP00000244289LIPE953
ENSP00000245206GOT2771
ENSP00000245787INSIG2942
ENSP00000249373SMO851
ENSP00000252486APOE991
ENSP00000253727NR1H2878
ENSP00000254351SDC1909
ENSP00000255030CRP953
ENSP00000256104FABP4944
ENSP00000258415CYP27A1942
ENSP00000260270FDX1891
ENSP00000260408ADAM10850
ENSP00000260433CYP19A1790
ENSP00000260645ABCG5969
ENSP00000261523RORA814
ENSP00000261693SCARB1992
ENSP00000261835CYP46A1942
ENSP00000262735PPARA780
ENSP00000263025MAPK3782
ENSP00000263816LRP2933
ENSP00000263980SLC9A1800
ENSP00000264005LCAT998
ENSP00000264039GPC1900
ENSP00000264896SCARB2922
ENSP00000265333VDAC1835
ENSP00000265517MTTP993
ENSP00000265565SCAP946
ENSP00000265723ABCB4889
ENSP00000268053CYP11A1999
ENSP00000269081ABCA10800
ENSP00000269228NPC1986
ENSP00000270202AKT1866
ENSP00000272286ABCG8975
ENSP00000272298CALM2858
ENSP00000276449STAR993
ENSP00000282397FLT1819
ENSP00000284981APP888
ENSP00000287820PPARG762
ENSP00000287936HMGCR998
ENSP00000289547NPC1L1936
ENSP00000291294PTGIR817
ENSP00000292079FXYD2794
ENSP00000292377GPC2900
ENSP00000292408FGFR4779
ENSP00000295598ATP1A1741
ENSP00000295731IHH719
ENSP00000295897ALB992
ENSP00000297261SHH786
ENSP00000297494NOS3974
ENSP00000297679HSD3B7923
ENSP00000299022LIPC980
ENSP00000301466SOAT2930
ENSP00000301645CYP7A1999
ENSP00000301732ABCA3923
ENSP00000302397ATP1A3741
ENSP00000303208PCSK9933
ENSP00000303634LRP8929
ENSP00000304032STARD5937
ENSP00000304111ABCG4957
ENSP00000307046SDC2900
ENSP00000307786CYCS837
ENSP00000308165CD36909
ENSP00000309124OLR1925
ENSP00000309757LPL991
ENSP00000310721CYP7B1955
ENSP00000312652LEP940
ENSP00000316746887
ENSP00000317674APOL1939
ENSP00000318852BPNT1900
ENSP00000318867CYP8B1905
ENSP00000321334LPA986
ENSP00000322788MMP1842
ENSP00000327801P4HB918
ENSP00000337224LRAT900
ENSP00000337354LIPA981
ENSP00000339191CAV1980
ENSP00000340944PTPN11909
ENSP00000343645SULT1A3800
ENSP00000344352ATF3804
ENSP00000344468SDC3900
ENSP00000344741INSIG1943
ENSP00000347717DHCR7965
ENSP00000348069SREBF1985
ENSP00000349467CALM1844
ENSP00000350425APOA4957
ENSP00000350941SRC877
ENSP00000353720CES1733
ENSP00000354476SREBF2995
ENSP00000354995ABCG1994
ENSP00000355629COG2834
ENSP00000356591SOAT1992
ENSP00000356789ATP1B1811
ENSP00000356969APOA2976
ENSP00000358421HSD3B1883
ENSP00000358424HSD3B2842
ENSP00000359864GPC4900
ENSP00000360316DHCR24992
ENSP00000360918CH25H936
ENSP00000361151CEL981
ENSP00000361405MMP9880
ENSP00000361818SDC4910
ENSP00000363115FGR900
ENSP00000363458LDLRAP1933
ENSP00000363827HSPG2916
ENSP00000363868ABCA1997
ENSP00000366246GPC6900
ENSP00000366267GPC5900
ENSP00000367343GBA2805
ENSP00000368678AGRN900
ENSP00000368752PRNP833
ENSP00000377836GPC3910
ENSP00000381250APOF934
ENSP00000385432SAR1B930
ENSP00000385806KCNMA1848
ENSP00000387946NR1H3722
ENSP00000391592PTPN6909
ENSP00000419970POR912
ENSP00000438095ELOVL5838
ENSP00000441828HPR924
ENSP00000447149NR1H4846
ENSP00000454071LDLR981
ENSP00000454407GOLGA6L2800
ENSP00000458149CAMP822
The human target proteins were predicted using STITCH, a database of Chemical-Protein interaction networks.