IMPPAT Phytochemical information: 
Acenaphthene

Acenaphthene
Summary

SMILES: c1cc2cccc3c2c(c1)CC3
InChI: InChI=1S/C12H10/c1-3-9-4-2-6-11-8-7-10(5-1)12(9)11/h1-6H,7-8H2
InChIKey: CWRYPZZKDGJXCA-UHFFFAOYSA-N
DeepSMILES: cccccccc6cc%10)CC5
Scaffold Graph/Node/Bond level: c1cc2c3c(cccc3c1)CC2
Scaffold Graph/Node level: C1CC2CCCC3CCC(C1)C23
Scaffold Graph level: C1CC2CCCC3CCC(C1)C23
Chemical classification
ClassyFire Kingdom: Organic compounds
ClassyFire Superclass: Benzenoids
ClassyFire Class: Naphthalenes
NP Classifier Biosynthetic pathway: Shikimates and Phenylpropanoids
NP Classifier Superclass: Phenanthrenoids
NP Classifier Class: Phenanthrenes
Synonymous chemical names:
acenaphthene
External chemical identifiers:
CID:CID_6734; ChEMBL:CHEMBL1797271; ChEBI:CHEBI:22154; ZINC:ZINC000001235986; FDASRS:V8UT1GAC5Y; SureChEMBL:SCHEMBL9017; MolPort-002-070-540
Chemical structure download


Acenaphthene
Physicochemical properties
Property name Tool Property value
Molecular weight (g/mol) RDKit 154.21
Log P RDKit 2.94
Topological polar surface area (Å2) RDKit 0
Number of hydrogen bond acceptors RDKit 0
Number of hydrogen bond donors RDKit 0
Number of carbon atoms RDKit 12
Number of heavy atoms RDKit 12
Number of heteroatoms RDKit 0
Number of nitrogen atoms RDKit 0
Number of sulfur atoms RDKit 0
Number of chiral carbon atoms RDKit 0
Stereochemical complexity RDKit 0
Number of sp hybridized carbon atoms RDKit 0
Number of sp2 hybridized carbon atoms RDKit 10
Number of sp3 hybridized carbon atoms RDKit 2
Shape complexity RDKit 0.17
Number of rotatable bonds RDKit 0
Number of aliphatic carbocycles RDKit 1
Number of aliphatic heterocycles RDKit 0
Number of aliphatic rings RDKit 1
Number of aromatic carbocycles RDKit 2
Number of aromatic heterocycles RDKit 0
Number of aromatic rings RDKit 2
Total number of rings RDKit 3
Number of saturated carbocycles RDKit 0
Number of saturated heterocycles RDKit 0
Number of saturated rings RDKit 0
Number of Smallest Set of Smallest Rings (SSSR) RDKit 3


Acenaphthene
Drug-likeness properties
Property nameToolProperty value
Number of Lipinski’s rule of 5 violations RDKit 0
Lipinski’s rule of 5 RDKit Passed
Number of Ghose rule violations RDKit 1
Ghose rule RDKit Failed
Veber rule RDKit Good
Egan rule RDKit Good
GSK 4/400 rule RDKit Good
Pfizer 3/75 rule RDKit Bad
Weighted quantitative estimate of drug-likeness (QEDw) score RDKit 0.55


Acenaphthene
ADME properties
Property nameToolProperty value
Bioavailability score SwissADME 0.55
Solubility class [ESOL] SwissADME Soluble
Solubility class [Silicos-IT] SwissADME Moderately soluble
Blood Brain Barrier permeation SwissADME Yes
Gastrointestinal absorption SwissADME Low
Log Kp (Skin permeation, cm/s) SwissADME -4.46
Number of PAINS structural alerts SwissADME 0
Number of Brenk structural alerts SwissADME 0
CYP1A2 inhibitor SwissADME Yes
CYP2C19 inhibitor SwissADME No
CYP2C9 inhibitor SwissADME No
CYP2D6 inhibitor SwissADME No
CYP3A4 inhibitor SwissADME No
P-glycoprotein substrate SwissADME Yes


Acenaphthene
Human target proteins
Protein identifierHGNC symbolCombined score from STITCH database
ENSP00000332679CYP2A13700
ENSP00000260630CYP1B1727
ENSP00000301141CYP2A6700
The human target proteins were predicted using STITCH, a database of Chemical-Protein interaction networks.