IMPPAT Phytochemical information: 
5-Hydroxymethylfurfural

5-Hydroxymethylfurfural
Summary

SMILES: OCc1ccc(o1)C=O
InChI: InChI=1S/C6H6O3/c7-3-5-1-2-6(4-8)9-5/h1-3,8H,4H2
InChIKey: NOEGNKMFWQHSLB-UHFFFAOYSA-N
DeepSMILES: OCcccco5)C=O
Scaffold Graph/Node/Bond level: c1ccoc1
Scaffold Graph/Node level: C1CCOC1
Scaffold Graph level: C1CCCC1
Functional groups: CO; cC=O; coc
Chemical classification
ClassyFire Kingdom: Organic compounds
ClassyFire Superclass: Organic oxygen compounds
ClassyFire Class: Organooxygen compounds
ClassyFire Subclass: Carbonyl compounds
NP Classifier Biosynthetic pathway: Polyketides
NP Classifier Superclass: Cyclic polyketides
NP Classifier Class: Furans
Synonymous chemical names:
5-hydroxymethyl furfural, 5-hydroxymethyl-2-furfuraldehyde, 5-(hydroxymethyl)furfural, 5-(Hydroxymethyl)furfural, 5-hydroxymethylfurfural, 5-hydroxymethyl-2-furfural
External chemical identifiers:
CID:CID_237332; ChEMBL:CHEMBL185885; ChEBI:CHEBI:412516; ZINC:ZINC000000900788; FDASRS:70ETD81LF0; SureChEMBL:SCHEMBL19176; MolPort-001-770-174
Chemical structure download


5-Hydroxymethylfurfural
Physicochemical properties
Property name Tool Property value
Molecular weight (g/mol) RDKit 126.11
Log P RDKit 0.58
Topological polar surface area (Å2) RDKit 50.44
Number of hydrogen bond acceptors RDKit 3
Number of hydrogen bond donors RDKit 1
Number of carbon atoms RDKit 6
Number of heavy atoms RDKit 9
Number of heteroatoms RDKit 3
Number of nitrogen atoms RDKit 0
Number of sulfur atoms RDKit 0
Number of chiral carbon atoms RDKit 0
Stereochemical complexity RDKit 0
Number of sp hybridized carbon atoms RDKit 0
Number of sp2 hybridized carbon atoms RDKit 5
Number of sp3 hybridized carbon atoms RDKit 1
Shape complexity RDKit 0.17
Number of rotatable bonds RDKit 2
Number of aliphatic carbocycles RDKit 0
Number of aliphatic heterocycles RDKit 0
Number of aliphatic rings RDKit 0
Number of aromatic carbocycles RDKit 0
Number of aromatic heterocycles RDKit 1
Number of aromatic rings RDKit 1
Total number of rings RDKit 1
Number of saturated carbocycles RDKit 0
Number of saturated heterocycles RDKit 0
Number of saturated rings RDKit 0
Number of Smallest Set of Smallest Rings (SSSR) RDKit 1


5-Hydroxymethylfurfural
Drug-likeness properties
Property nameToolProperty value
Number of Lipinski’s rule of 5 violations RDKit 0
Lipinski’s rule of 5 RDKit Passed
Number of Ghose rule violations RDKit 3
Ghose rule RDKit Failed
Veber rule RDKit Good
Egan rule RDKit Good
GSK 4/400 rule RDKit Good
Pfizer 3/75 rule RDKit Bad
Weighted quantitative estimate of drug-likeness (QEDw) score RDKit 0.59


5-Hydroxymethylfurfural
ADME properties
Property nameToolProperty value
Bioavailability score SwissADME 0.55
Solubility class [ESOL] SwissADME Very soluble
Solubility class [Silicos-IT] SwissADME Soluble
Blood Brain Barrier permeation SwissADME No
Gastrointestinal absorption SwissADME High
Log Kp (Skin permeation, cm/s) SwissADME -7.48
Number of PAINS structural alerts SwissADME 0
Number of Brenk structural alerts SwissADME 1
CYP1A2 inhibitor SwissADME No
CYP2C19 inhibitor SwissADME No
CYP2C9 inhibitor SwissADME No
CYP2D6 inhibitor SwissADME No
CYP3A4 inhibitor SwissADME No
P-glycoprotein substrate SwissADME No


5-Hydroxymethylfurfural
Human target proteins
Protein identifierHGNC symbolCombined score from STITCH database
ENSP00000333994HBB800
ENSP00000338742SULT1A2700
ENSP00000251595HBA2800
ENSP00000321988SULT1A1700
The human target proteins were predicted using STITCH, a database of Chemical-Protein interaction networks.