IMPPAT Phytochemical information: 
Panduratin A

Panduratin A
Summary

SMILES: COc1cc(O)c(c(c1)O)C(=O)[C@@H]1[C@H](CC=C(C)C)C(=CC[C@H]1c1ccccc1)C
InChI: InChI=1S/C26H30O4/c1-16(2)10-12-20-17(3)11-13-21(18-8-6-5-7-9-18)24(20)26(29)25-22(27)14-19(30-4)15-23(25)28/h5-11,14-15,20-21,24,27-28H,12-13H2,1-4H3/t20-,21+,24-/m1/s1
InChIKey: LYDZCXVWCFJAKQ-ZFGGDYGUSA-N
DeepSMILES: COcccO)ccc6)O))C=O)[C@@H][C@H]CC=CC)C))))C=CC[C@H]6cccccc6)))))))))C
Scaffold Graph/Node/Bond level: O=C(c1ccccc1)C1CC=CCC1c1ccccc1
Scaffold Graph/Node level: OC(C1CCCCC1)C1CCCCC1C1CCCCC1
Scaffold Graph level: CC(C1CCCCC1)C1CCCCC1C1CCCCC1
Functional groups: cOC; cO; cC(C)=O; CC=C(C)C
Chemical classification
ClassyFire Kingdom: Organic compounds
ClassyFire Superclass: Phenylpropanoids and polyketides
ClassyFire Class: Diarylheptanoids
ClassyFire Subclass: Linear diarylheptanoids
NP Classifier Biosynthetic pathway: Polyketides
NP Classifier Superclass: Phloroglucinols
NP Classifier Class: Acyl phloroglucinols
Synonymous chemical names:
panduratin a, Panduratin A
External chemical identifiers:
CID:CID_6483648; ChEMBL:CHEMBL379110; ChEBI:CHEBI:66725; FDASRS:27N2BIM2CR; SureChEMBL:SCHEMBL464699
Chemical structure download


Panduratin A
Physicochemical properties
Property name Tool Property value
Molecular weight (g/mol) RDKit 406.52
Log P RDKit 6.01
Topological polar surface area (Å2) RDKit 66.76
Number of hydrogen bond acceptors RDKit 4
Number of hydrogen bond donors RDKit 2
Number of carbon atoms RDKit 26
Number of heavy atoms RDKit 30
Number of heteroatoms RDKit 4
Number of nitrogen atoms RDKit 0
Number of sulfur atoms RDKit 0
Number of chiral carbon atoms RDKit 3
Stereochemical complexity RDKit 0.12
Number of sp hybridized carbon atoms RDKit 0
Number of sp2 hybridized carbon atoms RDKit 17
Number of sp3 hybridized carbon atoms RDKit 9
Shape complexity RDKit 0.35
Number of rotatable bonds RDKit 6
Number of aliphatic carbocycles RDKit 1
Number of aliphatic heterocycles RDKit 0
Number of aliphatic rings RDKit 1
Number of aromatic carbocycles RDKit 2
Number of aromatic heterocycles RDKit 0
Number of aromatic rings RDKit 2
Total number of rings RDKit 3
Number of saturated carbocycles RDKit 0
Number of saturated heterocycles RDKit 0
Number of saturated rings RDKit 0
Number of Smallest Set of Smallest Rings (SSSR) RDKit 3


Panduratin A
Drug-likeness properties
Property nameToolProperty value
Number of Lipinski’s rule of 5 violations RDKit 1
Lipinski’s rule of 5 RDKit Passed
Number of Ghose rule violations RDKit 1
Ghose rule RDKit Failed
Veber rule RDKit Good
Egan rule RDKit Bad
GSK 4/400 rule RDKit Bad
Pfizer 3/75 rule RDKit Bad
Weighted quantitative estimate of drug-likeness (QEDw) score RDKit 0.46


Panduratin A
ADME properties
Property nameToolProperty value
Bioavailability score SwissADME 0.55
Solubility class [ESOL] SwissADME Poorly soluble
Solubility class [Silicos-IT] SwissADME Poorly soluble
Blood Brain Barrier permeation SwissADME No
Gastrointestinal absorption SwissADME High
Log Kp (Skin permeation, cm/s) SwissADME -4.55
Number of PAINS structural alerts SwissADME 0
Number of Brenk structural alerts SwissADME 1
CYP1A2 inhibitor SwissADME No
CYP2C19 inhibitor SwissADME No
CYP2C9 inhibitor SwissADME Yes
CYP2D6 inhibitor SwissADME No
CYP3A4 inhibitor SwissADME Yes
P-glycoprotein substrate SwissADME Yes


Panduratin A
Human target proteins
Protein identifierHGNC symbolCombined score from STITCH database
ENSP00000262710ACIN1700
ENSP00000355759PARP1700
ENSP00000351273CASP8700
ENSP00000330237CASP9700
ENSP00000311032CASP3700
ENSP00000265164CASP6700
The human target proteins were predicted using STITCH, a database of Chemical-Protein interaction networks.