IMPPAT Phytochemical information: 
Machicendiol

Machicendiol
Summary

SMILES: OCCC(c1cc2cc(oc2c(c1)OC)c1ccc2c(c1)OCO2)O
InChI: InChI=1S/C19H18O6/c1-22-18-8-12(14(21)4-5-20)6-13-9-16(25-19(13)18)11-2-3-15-17(7-11)24-10-23-15/h2-3,6-9,14,20-21H,4-5,10H2,1H3
InChIKey: MINVCYFPVPBILB-UHFFFAOYSA-N
DeepSMILES: OCCCcccccoc5cc9)OC)))))cccccc6)OCO5)))))))))))))O
Scaffold Graph/Node/Bond level: c1ccc2oc(-c3ccc4c(c3)OCO4)cc2c1
Scaffold Graph/Node level: C1CCC2OC(C3CCC4OCOC4C3)CC2C1
Scaffold Graph level: C1CC2CCC(C3CC4CCCCC4C3)CC2C1
Functional groups: CO; coc; cOC; c1cOCO1
Chemical classification
ClassyFire Kingdom: Organic compounds
ClassyFire Superclass: Phenylpropanoids and polyketides
ClassyFire Class: 2-arylbenzofuran flavonoids
NP Classifier Biosynthetic pathway: Shikimates and Phenylpropanoids
NP Classifier Superclass: Lignans
NP Classifier Class: Neolignans
Synonymous chemical names:
machicendiol, Machicendiol
External chemical identifiers:
CID:CID_11121421; ChEMBL:CHEMBL3634693
Chemical structure download


Machicendiol
Physicochemical properties
Property name Tool Property value
Molecular weight (g/mol) RDKit 342.35
Log P RDKit 3.25
Topological polar surface area (Å2) RDKit 81.29
Number of hydrogen bond acceptors RDKit 6
Number of hydrogen bond donors RDKit 2
Number of carbon atoms RDKit 19
Number of heavy atoms RDKit 25
Number of heteroatoms RDKit 6
Number of nitrogen atoms RDKit 0
Number of sulfur atoms RDKit 0
Number of chiral carbon atoms RDKit 1
Stereochemical complexity RDKit 0.05
Number of sp hybridized carbon atoms RDKit 0
Number of sp2 hybridized carbon atoms RDKit 14
Number of sp3 hybridized carbon atoms RDKit 5
Shape complexity RDKit 0.26
Number of rotatable bonds RDKit 5
Number of aliphatic carbocycles RDKit 0
Number of aliphatic heterocycles RDKit 1
Number of aliphatic rings RDKit 1
Number of aromatic carbocycles RDKit 2
Number of aromatic heterocycles RDKit 1
Number of aromatic rings RDKit 3
Total number of rings RDKit 4
Number of saturated carbocycles RDKit 0
Number of saturated heterocycles RDKit 0
Number of saturated rings RDKit 0
Number of Smallest Set of Smallest Rings (SSSR) RDKit 4


Machicendiol
Drug-likeness properties
Property nameToolProperty value
Number of Lipinski’s rule of 5 violations RDKit 0
Lipinski’s rule of 5 RDKit Passed
Number of Ghose rule violations RDKit 0
Ghose rule RDKit Passed
Veber rule RDKit Good
Egan rule RDKit Good
GSK 4/400 rule RDKit Good
Pfizer 3/75 rule RDKit Bad
Weighted quantitative estimate of drug-likeness (QEDw) score RDKit 0.74


Machicendiol
ADME properties
Property nameToolProperty value
Bioavailability score SwissADME 0.55
Solubility class [ESOL] SwissADME Soluble
Solubility class [Silicos-IT] SwissADME Moderately soluble
Blood Brain Barrier permeation SwissADME No
Gastrointestinal absorption SwissADME High
Log Kp (Skin permeation, cm/s) SwissADME -6.55
Number of PAINS structural alerts SwissADME 0
Number of Brenk structural alerts SwissADME 0
CYP1A2 inhibitor SwissADME Yes
CYP2C19 inhibitor SwissADME No
CYP2C9 inhibitor SwissADME Yes
CYP2D6 inhibitor SwissADME Yes
CYP3A4 inhibitor SwissADME Yes
P-glycoprotein substrate SwissADME Yes