IMPPAT Phytochemical information: 
Stemotinine

Stemotinine
Summary

SMILES: O=C1O[C@@H](C[C@@H]1C)[C@@H]1CC[C@]23N1C[C@H](O2)CC[C@]13OC(=O)[C@@H](C1)C
InChI: InChI=1S/C18H25NO5/c1-10-7-14(22-15(10)20)13-4-6-18-17(8-11(2)16(21)24-17)5-3-12(23-18)9-19(13)18/h10-14H,3-9H2,1-2H3/t10-,11+,12+,13-,14-,17-,18-/m0/s1
InChIKey: GRCVOPKGGZCLPF-HMVZOGCKSA-N
DeepSMILES: O=CO[C@@H]C[C@@H]5C)))[C@@H]CC[C@]N5C[C@H]O5)CC[C@@]7OC=O)[C@@H]C5)C
Scaffold Graph/Node/Bond level: O=C1CCC(C2CCC34OC(CCC35CCC(=O)O5)CN24)O1
Scaffold Graph/Node level: OC1CCC(C2CCC34OC(CCC35CCC(O)O5)CN24)O1
Scaffold Graph level: CC1CCC(C2CCC34CC(CCC35CCC(C)C5)CC24)C1
Functional groups: COC(=O)C; C[C@@]1(C)OCCN1C
Chemical classification
ClassyFire Kingdom: Organic compounds
ClassyFire Superclass: Alkaloids and derivatives
ClassyFire Class: Stemona alkaloids
ClassyFire Subclass: Tuberostemospironine-type alkaloids
NP Classifier Biosynthetic pathway: Alkaloids
NP Classifier Superclass: Ornithine alkaloids
NP Classifier Class: Stemona alkaloids
Synonymous chemical names:
Stemotinine, stemotinine
External chemical identifiers:
CID:CID_101160220; ZINC:ZINC000169646770
Chemical structure download


Stemotinine
Physicochemical properties
Property name Tool Property value
Molecular weight (g/mol) RDKit 335.4
Log P RDKit 1.61
Topological polar surface area (Å2) RDKit 65.07
Number of hydrogen bond acceptors RDKit 6
Number of hydrogen bond donors RDKit 0
Number of carbon atoms RDKit 18
Number of heavy atoms RDKit 24
Number of heteroatoms RDKit 6
Number of nitrogen atoms RDKit 1
Number of sulfur atoms RDKit 0
Number of chiral carbon atoms RDKit 7
Stereochemical complexity RDKit 0.39
Number of sp hybridized carbon atoms RDKit 0
Number of sp2 hybridized carbon atoms RDKit 2
Number of sp3 hybridized carbon atoms RDKit 16
Shape complexity RDKit 0.89
Number of rotatable bonds RDKit 1
Number of aliphatic carbocycles RDKit 0
Number of aliphatic heterocycles RDKit 5
Number of aliphatic rings RDKit 5
Number of aromatic carbocycles RDKit 0
Number of aromatic heterocycles RDKit 0
Number of aromatic rings RDKit 0
Total number of rings RDKit 5
Number of saturated carbocycles RDKit 0
Number of saturated heterocycles RDKit 5
Number of saturated rings RDKit 5
Number of Smallest Set of Smallest Rings (SSSR) RDKit 5


Stemotinine
Drug-likeness properties
Property nameToolProperty value
Number of Lipinski’s rule of 5 violations RDKit 0
Lipinski’s rule of 5 RDKit Passed
Number of Ghose rule violations RDKit 0
Ghose rule RDKit Passed
Veber rule RDKit Good
Egan rule RDKit Good
GSK 4/400 rule RDKit Good
Pfizer 3/75 rule RDKit Bad
Weighted quantitative estimate of drug-likeness (QEDw) score RDKit 0.68


Stemotinine
ADME properties
Property nameToolProperty value
Bioavailability score SwissADME 0.55
Solubility class [ESOL] SwissADME Soluble
Solubility class [Silicos-IT] SwissADME Soluble
Blood Brain Barrier permeation SwissADME Yes
Gastrointestinal absorption SwissADME High
Log Kp (Skin permeation, cm/s) SwissADME -6.94
Number of PAINS structural alerts SwissADME 0
Number of Brenk structural alerts SwissADME 1
CYP1A2 inhibitor SwissADME No
CYP2C19 inhibitor SwissADME No
CYP2C9 inhibitor SwissADME No
CYP2D6 inhibitor SwissADME No
CYP3A4 inhibitor SwissADME No
P-glycoprotein substrate SwissADME No