IMPPAT Phytochemical information: 
Uskudaramine

Uskudaramine
Summary

SMILES: COc1cc2-c3c4[C@H](Cc2c(c1O)c1cc(ccc1O)C[C@@H]1N(C)CCc2c1cc(O)c(c2)OC)N(C)CCc4c(c(c3OC)OC)OC
InChI: InChI=1S/C39H44N2O8/c1-40-12-10-21-16-31(45-3)30(43)18-23(21)27(40)15-20-8-9-29(42)26(14-20)33-24-17-28-34-22(11-13-41(28)2)37(47-5)39(49-7)38(48-6)35(34)25(24)19-32(46-4)36(33)44/h8-9,14,16,18-19,27-28,42-44H,10-13,15,17H2,1-7H3/t27-,28-/m0/s1
InChIKey: HELOFLQDAYUREM-NSOVKSMOSA-N
DeepSMILES: COccc-cc[C@H]Cc6cc%10O))cccccc6O))))C[C@@H]NC)CCcc6ccO)cc6)OC))))))))))))))))))NC)CCc6ccc%10OC)))OC)))OC
Scaffold Graph/Node/Bond level: c1cc(CC2NCCc3ccccc32)cc(-c2cccc3c2CC2NCCc4cccc-3c42)c1
Scaffold Graph/Node level: C1CCC2C(C1)CCNC2CC1CCCC(C2CCCC3C2CC2NCCC4CCCC3C42)C1
Scaffold Graph level: C1CCC2C(C1)CCCC2CC1CCCC(C2CCCC3C2CC2CCCC4CCCC3C42)C1
Functional groups: cOC; CN(C)C; cO
Chemical classification
ClassyFire Kingdom: Organic compounds
ClassyFire Superclass: Alkaloids and derivatives
ClassyFire Class: Aporphines
NP Classifier Biosynthetic pathway: Alkaloids
NP Classifier Superclass: Tyrosine alkaloids
NP Classifier Class: Aporphine alkaloids|Isoquinoline alkaloids
Synonymous chemical names:
uskudaramine
External chemical identifiers:
CID:CID_102274097; ZINC:ZINC000238769257
Chemical structure download


Uskudaramine
Physicochemical properties
Property name Tool Property value
Molecular weight (g/mol) RDKit 668.79
Log P RDKit 6.04
Topological polar surface area (Å2) RDKit 113.32
Number of hydrogen bond acceptors RDKit 10
Number of hydrogen bond donors RDKit 3
Number of carbon atoms RDKit 39
Number of heavy atoms RDKit 49
Number of heteroatoms RDKit 10
Number of nitrogen atoms RDKit 2
Number of sulfur atoms RDKit 0
Number of chiral carbon atoms RDKit 2
Stereochemical complexity RDKit 0.05
Number of sp hybridized carbon atoms RDKit 0
Number of sp2 hybridized carbon atoms RDKit 24
Number of sp3 hybridized carbon atoms RDKit 15
Shape complexity RDKit 0.38
Number of rotatable bonds RDKit 8
Number of aliphatic carbocycles RDKit 1
Number of aliphatic heterocycles RDKit 2
Number of aliphatic rings RDKit 3
Number of aromatic carbocycles RDKit 4
Number of aromatic heterocycles RDKit 0
Number of aromatic rings RDKit 4
Total number of rings RDKit 7
Number of saturated carbocycles RDKit 0
Number of saturated heterocycles RDKit 0
Number of saturated rings RDKit 0
Number of Smallest Set of Smallest Rings (SSSR) RDKit 7


Uskudaramine
Drug-likeness properties
Property nameToolProperty value
Number of Lipinski’s rule of 5 violations RDKit 2
Lipinski’s rule of 5 RDKit Failed
Number of Ghose rule violations RDKit 4
Ghose rule RDKit Failed
Veber rule RDKit Good
Egan rule RDKit Bad
GSK 4/400 rule RDKit Bad
Pfizer 3/75 rule RDKit Bad
Weighted quantitative estimate of drug-likeness (QEDw) score RDKit 0.21


Uskudaramine
ADME properties
Property nameToolProperty value
Bioavailability score SwissADME 0.55
Solubility class [ESOL] SwissADME Poorly soluble
Solubility class [Silicos-IT] SwissADME Poorly soluble
Blood Brain Barrier permeation SwissADME No
Gastrointestinal absorption SwissADME High
Log Kp (Skin permeation, cm/s) SwissADME -6.28
Number of PAINS structural alerts SwissADME 0
Number of Brenk structural alerts SwissADME 0
CYP1A2 inhibitor SwissADME No
CYP2C19 inhibitor SwissADME No
CYP2C9 inhibitor SwissADME No
CYP2D6 inhibitor SwissADME No
CYP3A4 inhibitor SwissADME No
P-glycoprotein substrate SwissADME No