IMPPAT Phytochemical information: 
Lyfoline

Lyfoline
Summary

SMILES: COc1cc2-c3cc(/C=C\C(=O)O[C@@H]4C[C@@H](c2cc1O)N1CCCC[C@@H]1C4)ccc3O
InChI: InChI=1S/C25H27NO5/c1-30-24-14-18-19(13-23(24)28)21-12-17(11-16-4-2-3-9-26(16)21)31-25(29)8-6-15-5-7-22(27)20(18)10-15/h5-8,10,13-14,16-17,21,27-28H,2-4,9,11-12H2,1H3/b8-6-/t16-,17+,21+/m1/s1
InChIKey: CDTGNBVPXHNHGE-RDOPERODSA-N
DeepSMILES: COccc-ccc/C=C\C=O)O[C@@H]C[C@@H]c%12cc%16O))))NCCCC[C@@H]6C%10))))))))))))))ccc6O
Scaffold Graph/Node/Bond level: O=C1C=Cc2cccc(c2)-c2ccccc2C2CC(CC3CCCCN32)O1
Scaffold Graph/Node level: OC1CCC2CCCC(C2)C2CCCCC2C2CC(CC3CCCCN32)O1
Scaffold Graph level: CC1CCC2CCCC(C2)C2CCCCC2C2CC(C1)CC1CCCCC12
Functional groups: cOC; c/C=C\C(=O)OC; cO; CN(C)C
Chemical classification
ClassyFire Kingdom: Organic compounds
ClassyFire Superclass: Organoheterocyclic compounds
ClassyFire Class: Quinolizidines
NP Classifier Biosynthetic pathway: Alkaloids
NP Classifier Superclass: Lysine alkaloids
NP Classifier Class: Quinolizidine alkaloids
Synonymous chemical names:
lyfoline
External chemical identifiers:
CID:CID_6436825; ChEMBL:CHEMBL1172804; ZINC:ZINC000005371568
Chemical structure download


Lyfoline
Physicochemical properties
Property name Tool Property value
Molecular weight (g/mol) RDKit 421.49
Log P RDKit 4.4
Topological polar surface area (Å2) RDKit 79.23
Number of hydrogen bond acceptors RDKit 6
Number of hydrogen bond donors RDKit 2
Number of carbon atoms RDKit 25
Number of heavy atoms RDKit 31
Number of heteroatoms RDKit 6
Number of nitrogen atoms RDKit 1
Number of sulfur atoms RDKit 0
Number of chiral carbon atoms RDKit 3
Stereochemical complexity RDKit 0.12
Number of sp hybridized carbon atoms RDKit 0
Number of sp2 hybridized carbon atoms RDKit 15
Number of sp3 hybridized carbon atoms RDKit 10
Shape complexity RDKit 0.4
Number of rotatable bonds RDKit 1
Number of aliphatic carbocycles RDKit 0
Number of aliphatic heterocycles RDKit 3
Number of aliphatic rings RDKit 3
Number of aromatic carbocycles RDKit 2
Number of aromatic heterocycles RDKit 0
Number of aromatic rings RDKit 2
Total number of rings RDKit 5
Number of saturated carbocycles RDKit 0
Number of saturated heterocycles RDKit 2
Number of saturated rings RDKit 2
Number of Smallest Set of Smallest Rings (SSSR) RDKit 5


Lyfoline
Drug-likeness properties
Property nameToolProperty value
Number of Lipinski’s rule of 5 violations RDKit 0
Lipinski’s rule of 5 RDKit Passed
Number of Ghose rule violations RDKit 0
Ghose rule RDKit Passed
Veber rule RDKit Good
Egan rule RDKit Good
GSK 4/400 rule RDKit Bad
Pfizer 3/75 rule RDKit Bad
Weighted quantitative estimate of drug-likeness (QEDw) score RDKit 0.66


Lyfoline
ADME properties
Property nameToolProperty value
Bioavailability score SwissADME 0.55
Solubility class [ESOL] SwissADME Moderately soluble
Solubility class [Silicos-IT] SwissADME Moderately soluble
Blood Brain Barrier permeation SwissADME No
Gastrointestinal absorption SwissADME High
Log Kp (Skin permeation, cm/s) SwissADME -5.84
Number of PAINS structural alerts SwissADME 0
Number of Brenk structural alerts SwissADME 0
CYP1A2 inhibitor SwissADME No
CYP2C19 inhibitor SwissADME No
CYP2C9 inhibitor SwissADME No
CYP2D6 inhibitor SwissADME Yes
CYP3A4 inhibitor SwissADME No
P-glycoprotein substrate SwissADME Yes