IMPPAT Phytochemical information: 
Phenanthrene

Phenanthrene
Summary

SMILES: c1ccc2c(c1)c1ccccc1cc2
InChI: InChI=1S/C14H10/c1-3-7-13-11(5-1)9-10-12-6-2-4-8-14(12)13/h1-10H
InChIKey: YNPNZTXNASCQKK-UHFFFAOYSA-N
DeepSMILES: cccccc6)cccccc6cc%10
Scaffold Graph/Node/Bond level: c1ccc2c(c1)ccc1ccccc12
Scaffold Graph/Node level: C1CCC2C(C1)CCC1CCCCC12
Scaffold Graph level: C1CCC2C(C1)CCC1CCCCC12
Chemical classification
ClassyFire Kingdom: Organic compounds
ClassyFire Superclass: Benzenoids
ClassyFire Class: Phenanthrenes and derivatives
NP Classifier Biosynthetic pathway: Shikimates and Phenylpropanoids
NP Classifier Superclass: Phenanthrenoids
NP Classifier Class: Phenanthrenes
Synonymous chemical names:
Phenanthrene, phenanthrenea ( = i), phenanthrene
External chemical identifiers:
CID:CID_995; ChEMBL:CHEMBL46730; ChEBI:CHEBI:28851; ZINC:ZINC000000967819; FDASRS:448J8E5BST; SureChEMBL:SCHEMBL7643; MolPort-001-770-271
Chemical structure download


Phenanthrene
Physicochemical properties
Property name Tool Property value
Molecular weight (g/mol) RDKit 178.23
Log P RDKit 3.99
Topological polar surface area (Å2) RDKit 0
Number of hydrogen bond acceptors RDKit 0
Number of hydrogen bond donors RDKit 0
Number of carbon atoms RDKit 14
Number of heavy atoms RDKit 14
Number of heteroatoms RDKit 0
Number of nitrogen atoms RDKit 0
Number of sulfur atoms RDKit 0
Number of chiral carbon atoms RDKit 0
Stereochemical complexity RDKit 0
Number of sp hybridized carbon atoms RDKit 0
Number of sp2 hybridized carbon atoms RDKit 14
Number of sp3 hybridized carbon atoms RDKit 0
Shape complexity RDKit 0
Number of rotatable bonds RDKit 0
Number of aliphatic carbocycles RDKit 0
Number of aliphatic heterocycles RDKit 0
Number of aliphatic rings RDKit 0
Number of aromatic carbocycles RDKit 3
Number of aromatic heterocycles RDKit 0
Number of aromatic rings RDKit 3
Total number of rings RDKit 3
Number of saturated carbocycles RDKit 0
Number of saturated heterocycles RDKit 0
Number of saturated rings RDKit 0
Number of Smallest Set of Smallest Rings (SSSR) RDKit 3


Phenanthrene
Drug-likeness
Property nameToolProperty value
Number of Lipinski’s rule of 5 violations RDKit 0
Lipinski’s rule of 5 filter RDKit Passed
Number of Ghose filter violations RDKit 0
Ghose filter RDKit Passed
Veber filter RDKit Good
Pfizer 3/75 filter RDKit Bad
GSK 4/400 filter RDKit Good
Weighted quantitative estimate of drug-likeness (QEDw) score RDKit 0.45641


Phenanthrene
ADME properties
Property nameToolProperty value
Bioavailability score SwissADME 0.55
Solubility class [ESOL] SwissADME Moderately soluble
Solubility class [Silicos-IT] SwissADME Moderately soluble
Blood Brain Barrier permeation SwissADME Yes
Gastrointestinal absorption SwissADME Low
Log Kp (Skin permeation, cm/s) SwissADME -4.22
Number of PAINS structural alerts SwissADME 0
Number of Brenk structural alerts SwissADME 1
CYP1A2 inhibitor SwissADME Yes
CYP2C19 inhibitor SwissADME Yes
CYP2C9 inhibitor SwissADME No
CYP2D6 inhibitor SwissADME No
CYP3A4 inhibitor SwissADME No
P-glycoprotein substrate SwissADME No


Phenanthrene
Phytochemical - Human target proteins supported by experimental evidence associations
Human target proteins supported by experimental evidence
IMPPAT target identifierGene identifierHGNC symbolEntrez Gene identifierSource
TAR_EXP_000759ENSG00000169429CXCL83576NPASS
TAR_EXP_000786ENSG00000177606JUN3725NPASS
TAR_EXP_001206ENSG00000042088TDP155775NPASS
TAR_EXP_001461ENSG00000186350RXRA6256NPASS
TAR_EXP_001923ENSG00000066135KDM4A9682NPASS
TAR_EXP_001631ENSG00000165409TSHR7253NPASS
TAR_EXP_001942ENSG00000012504NR1H49971NPASS
TAR_EXP_000966ENSG00000116044NFE2L24780NPASS
TAR_EXP_000265ENSG00000255974CYP2A61548BindingDB, ChEMBL, NPASS
TAR_EXP_000411ENSG00000165092ALDH1A1216NPASS
TAR_EXP_000676ENSG00000072506HSD17B103028NPASS
TAR_EXP_000798ENSG00000055118KCNH23757NPASS
TAR_EXP_000097ENSG00000108468CBX110951NPASS