IMPPAT Phytochemical information: 
Daphnoretin

Daphnoretin
Summary

SMILES: COc1cc2cc(Oc3ccc4c(c3)oc(=O)cc4)c(=O)oc2cc1O
InChI: InChI=1S/C19H12O7/c1-23-16-6-11-7-17(19(22)26-15(11)9-13(16)20)24-12-4-2-10-3-5-18(21)25-14(10)8-12/h2-9,20H,1H3
InChIKey: JRHMMVBOTXEHGJ-UHFFFAOYSA-N
DeepSMILES: COcccccOcccccc6)oc=O)cc6))))))))))c=O)oc6cc%10O
Scaffold Graph/Node/Bond level: O=c1ccc2ccc(Oc3cc4ccccc4oc3=O)cc2o1
Scaffold Graph/Node level: OC1CCC2CCC(OC3CC4CCCCC4OC3O)CC2O1
Scaffold Graph level: CC1CCC2CCC(CC3CC4CCCCC4CC3C)CC2C1
Functional groups: cOC; cOc; coc; c=O; cO
Chemical classification
ClassyFire Kingdom: Organic compounds
ClassyFire Superclass: Phenylpropanoids and polyketides
ClassyFire Class: Coumarins and derivatives
ClassyFire Subclass: Hydroxycoumarins
NP Classifier Biosynthetic pathway: Shikimates and Phenylpropanoids
NP Classifier Superclass: Coumarins
NP Classifier Class: Simple coumarins
Synonymous chemical names:
Daphnoretin, daphnoretin, c19h12o7
External chemical identifiers:
CID:CID_5281406; ChEMBL:CHEMBL508494; ChEBI:CHEBI:4324; ZINC:ZINC000000689683; FDASRS:1A7Q3KY3LH; SureChEMBL:SCHEMBL13784417; MolPort-002-532-429
Chemical structure download


Daphnoretin
Physicochemical properties
Property name Tool Property value
Molecular weight (g/mol) RDKit 352.3
Log P RDKit 3.41
Topological polar surface area (Å2) RDKit 99.11
Number of hydrogen bond acceptors RDKit 7
Number of hydrogen bond donors RDKit 1
Number of carbon atoms RDKit 19
Number of heavy atoms RDKit 26
Number of heteroatoms RDKit 7
Number of nitrogen atoms RDKit 0
Number of sulfur atoms RDKit 0
Number of chiral carbon atoms RDKit 0
Stereochemical complexity RDKit 0
Number of sp hybridized carbon atoms RDKit 0
Number of sp2 hybridized carbon atoms RDKit 18
Number of sp3 hybridized carbon atoms RDKit 1
Shape complexity RDKit 0.05
Number of rotatable bonds RDKit 3
Number of aliphatic carbocycles RDKit 0
Number of aliphatic heterocycles RDKit 0
Number of aliphatic rings RDKit 0
Number of aromatic carbocycles RDKit 2
Number of aromatic heterocycles RDKit 2
Number of aromatic rings RDKit 4
Total number of rings RDKit 4
Number of saturated carbocycles RDKit 0
Number of saturated heterocycles RDKit 0
Number of saturated rings RDKit 0
Number of Smallest Set of Smallest Rings (SSSR) RDKit 4


Daphnoretin
Drug-likeness
Property nameToolProperty value
Number of Lipinski’s rule of 5 violations RDKit 0
Lipinski’s rule of 5 filter RDKit Passed
Number of Ghose filter violations RDKit 0
Ghose filter RDKit Passed
Veber filter RDKit Good
Pfizer 3/75 filter RDKit Bad
GSK 4/400 filter RDKit Good
Weighted quantitative estimate of drug-likeness (QEDw) score RDKit 0.564088


Daphnoretin
ADME properties
Property nameToolProperty value
Bioavailability score SwissADME 0.55
Solubility class [ESOL] SwissADME Moderately soluble
Solubility class [Silicos-IT] SwissADME Poorly soluble
Blood Brain Barrier permeation SwissADME No
Gastrointestinal absorption SwissADME High
Log Kp (Skin permeation, cm/s) SwissADME -6.14
Number of PAINS structural alerts SwissADME 0
Number of Brenk structural alerts SwissADME 1
CYP1A2 inhibitor SwissADME Yes
CYP2C19 inhibitor SwissADME No
CYP2C9 inhibitor SwissADME Yes
CYP2D6 inhibitor SwissADME No
CYP3A4 inhibitor SwissADME No
P-glycoprotein substrate SwissADME No


Daphnoretin
Phytochemical - Human target proteins supported by experimental evidence associations
Human target proteins supported by experimental evidence
IMPPAT target identifierGene identifierHGNC symbolEntrez Gene identifierSource
TAR_EXP_001125ENSG00000127445PIN15300NPASS
TAR_EXP_000819ENSG00000235268KDM4E390245NPASS
TAR_EXP_000814ENSG00000108424KPNB13837NPASS
TAR_EXP_000053ENSG00000079337RAPGEF310411ChEMBL, NPASS
TAR_EXP_000119ENSG00000101751POLI11201NPASS
TAR_EXP_000676ENSG00000072506HSD17B103028NPASS
TAR_EXP_000322ENSG00000197635DPP41803ChEMBL, NPASS
TAR_EXP_000411ENSG00000165092ALDH1A1216NPASS
TAR_EXP_000853ENSG00000276155MAPT4137NPASS
TAR_EXP_000280ENSG00000160868CYP3A41576NPASS
TAR_EXP_000860ENSG00000152601MBNL14154NPASS
TAR_EXP_000706ENSG00000291796APEX1328NPASS
TAR_EXP_001031ENSG00000112312GMNN51053NPASS
TAR_EXP_001059ENSG00000122008POLK51426NPASS
TAR_EXP_000701ENSG00000164120HPGD3248NPASS
TAR_EXP_001150ENSG00000070501POLB5423NPASS
TAR_EXP_001206ENSG00000042088TDP155775NPASS
TAR_EXP_001929ENSG00000079999KEAP19817ChEMBL
TAR_EXP_000017ENSG00000169371SNUPN10073NPASS
TAR_EXP_000966ENSG00000116044NFE2L24780ChEMBL