IMPPAT Phytochemical information: 
1,3,5,6-Tetrahydroxyxanthone

1,3,5,6-Tetrahydroxyxanthone
Summary

SMILES: Oc1cc(O)c2c(c1)oc1c(c2=O)ccc(c1O)O
InChI: InChI=1S/C13H8O6/c14-5-3-8(16)10-9(4-5)19-13-6(11(10)17)1-2-7(15)12(13)18/h1-4,14-16,18H
InChIKey: CCEBJWKUMKKCDF-UHFFFAOYSA-N
DeepSMILES: OcccO)ccc6)occc6=O))cccc6O))O
Scaffold Graph/Node/Bond level: O=c1c2ccccc2oc2ccccc12
Scaffold Graph/Node level: OC1C2CCCCC2OC2CCCCC21
Scaffold Graph level: CC1C2CCCCC2CC2CCCCC21
Functional groups: cO; coc; c=O
Chemical classification
ClassyFire Kingdom: Organic compounds
ClassyFire Superclass: Organoheterocyclic compounds
ClassyFire Class: Benzopyrans
ClassyFire Subclass: 1-benzopyrans
NP Classifier Biosynthetic pathway: Shikimates and Phenylpropanoids
NP Classifier Superclass: Xanthones
NP Classifier Class: Plant xanthones
Synonymous chemical names:
1,3,5,6-tetrahydroxyxanthone, 1,3,5,6-tetrahydroxy-xanthone
External chemical identifiers:
CID:CID_5479774; ChEMBL:CHEMBL448040; ZINC:ZINC000014764374; SureChEMBL:SCHEMBL2313484; MolPort-029-943-142
Chemical structure download


1,3,5,6-Tetrahydroxyxanthone
Physicochemical properties
Property name Tool Property value
Molecular weight (g/mol) RDKit 260.2
Log P RDKit 1.77
Topological polar surface area (Å2) RDKit 111.13
Number of hydrogen bond acceptors RDKit 6
Number of hydrogen bond donors RDKit 4
Number of carbon atoms RDKit 13
Number of heavy atoms RDKit 19
Number of heteroatoms RDKit 6
Number of nitrogen atoms RDKit 0
Number of sulfur atoms RDKit 0
Number of chiral carbon atoms RDKit 0
Stereochemical complexity RDKit 0
Number of sp hybridized carbon atoms RDKit 0
Number of sp2 hybridized carbon atoms RDKit 13
Number of sp3 hybridized carbon atoms RDKit 0
Shape complexity RDKit 0
Number of rotatable bonds RDKit 0
Number of aliphatic carbocycles RDKit 0
Number of aliphatic heterocycles RDKit 0
Number of aliphatic rings RDKit 0
Number of aromatic carbocycles RDKit 2
Number of aromatic heterocycles RDKit 1
Number of aromatic rings RDKit 3
Total number of rings RDKit 3
Number of saturated carbocycles RDKit 0
Number of saturated heterocycles RDKit 0
Number of saturated rings RDKit 0
Number of Smallest Set of Smallest Rings (SSSR) RDKit 3


1,3,5,6-Tetrahydroxyxanthone
Drug-likeness
Property nameToolProperty value
Number of Lipinski’s rule of 5 violations RDKit 0
Lipinski’s rule of 5 filter RDKit Passed
Number of Ghose filter violations RDKit 0
Ghose filter RDKit Passed
Veber filter RDKit Good
Pfizer 3/75 filter RDKit Good
GSK 4/400 filter RDKit Good
Weighted quantitative estimate of drug-likeness (QEDw) score RDKit 0.361843


1,3,5,6-Tetrahydroxyxanthone
ADME properties
Property nameToolProperty value
Bioavailability score SwissADME 0.55
Solubility class [ESOL] SwissADME Soluble
Solubility class [Silicos-IT] SwissADME Soluble
Blood Brain Barrier permeation SwissADME No
Gastrointestinal absorption SwissADME High
Log Kp (Skin permeation, cm/s) SwissADME -6.40
Number of PAINS structural alerts SwissADME 1
Number of Brenk structural alerts SwissADME 2
CYP1A2 inhibitor SwissADME Yes
CYP2C19 inhibitor SwissADME No
CYP2C9 inhibitor SwissADME No
CYP2D6 inhibitor SwissADME Yes
CYP3A4 inhibitor SwissADME Yes
P-glycoprotein substrate SwissADME No


1,3,5,6-Tetrahydroxyxanthone
Phytochemical - Human target proteins supported by experimental evidence associations
Human target proteins supported by experimental evidence
IMPPAT target identifierGene identifierHGNC symbolEntrez Gene identifierSource
TAR_EXP_000965ENSG00000105409ATP1A3478ChEMBL
TAR_EXP_000981ENSG00000137731FXYD2486ChEMBL, NPASS
TAR_EXP_000974ENSG00000069849ATP1B3483ChEMBL
TAR_EXP_000973ENSG00000129244ATP1B2482ChEMBL
TAR_EXP_000972ENSG00000143153ATP1B1481ChEMBL
TAR_EXP_000971ENSG00000132681ATP1A4480ChEMBL
TAR_EXP_000962ENSG00000163399ATP1A1476ChEMBL
TAR_EXP_000963ENSG00000018625ATP1A2477ChEMBL
TAR_EXP_000295ENSG00000159640ACE1636BindingDB, ChEMBL, NPASS