IMPPAT Phytochemical information: 
Gelsemine

Gelsemine
Summary

SMILES: C=C[C@]12CN([C@H]3[C@@H]2[C@]2([C@H]4C[C@@H]1[C@@H]3CO4)C(=O)Nc1c2cccc1)C
InChI: InChI=1S/C20H22N2O2/c1-3-19-10-22(2)16-11-9-24-15(8-13(11)19)20(17(16)19)12-6-4-5-7-14(12)21-18(20)23/h3-7,11,13,15-17H,1,8-10H2,2H3,(H,21,23)/t11-,13+,15+,16+,17-,19-,20-/m0/s1
InChIKey: NFYYATWFXNPTRM-QJICHLCESA-N
DeepSMILES: C=C[C@@]CN[C@H][C@@H]5[C@][C@H]C[C@@H]9[C@@H]7CO6))))))C=O)Ncc5cccc6)))))))))))C
Scaffold Graph/Node/Bond level: O=C1Nc2ccccc2C12C1CC3C(CO1)C1NCC3C12
Scaffold Graph/Node level: OC1NC2CCCCC2C12C1CC3C(CO1)C1NCC3C12
Scaffold Graph level: CC1CC2CCCCC2C12C1CCC3C(C1)C1CCC3C12
Functional groups: C=CC; CN(C)C; COC; cNC(=O)C
Chemical classification
ClassyFire Kingdom: Organic compounds
ClassyFire Superclass: Alkaloids and derivatives
ClassyFire Class: Gelsemium alkaloids
NP Classifier Biosynthetic pathway: Alkaloids
NP Classifier Superclass: Tryptophan alkaloids
NP Classifier Class: Corynanthe type
Synonymous chemical names:
gelsemine
External chemical identifiers:
CID:CID_5390854; ChEMBL:CHEMBL521561; ZINC:ZINC000000033878; FDASRS:5Y13A78Z72; MolPort-006-069-179
Chemical structure download


Gelsemine
Physicochemical properties
Property name Tool Property value
Molecular weight (g/mol) RDKit 322.41
Log P RDKit 2.03
Topological polar surface area (Å2) RDKit 41.57
Number of hydrogen bond acceptors RDKit 3
Number of hydrogen bond donors RDKit 1
Number of carbon atoms RDKit 20
Number of heavy atoms RDKit 24
Number of heteroatoms RDKit 4
Number of nitrogen atoms RDKit 2
Number of sulfur atoms RDKit 0
Number of chiral carbon atoms RDKit 7
Stereochemical complexity RDKit 0.35
Number of sp hybridized carbon atoms RDKit 0
Number of sp2 hybridized carbon atoms RDKit 9
Number of sp3 hybridized carbon atoms RDKit 11
Shape complexity RDKit 0.55
Number of rotatable bonds RDKit 0
Number of aliphatic carbocycles RDKit 2
Number of aliphatic heterocycles RDKit 3
Number of aliphatic rings RDKit 5
Number of aromatic carbocycles RDKit 1
Number of aromatic heterocycles RDKit 0
Number of aromatic rings RDKit 1
Total number of rings RDKit 6
Number of saturated carbocycles RDKit 2
Number of saturated heterocycles RDKit 2
Number of saturated rings RDKit 4
Number of Smallest Set of Smallest Rings (SSSR) RDKit 6


Gelsemine
Drug-likeness
Property nameToolProperty value
Number of Lipinski’s rule of 5 violations RDKit 0
Lipinski’s rule of 5 filter RDKit Passed
Number of Ghose filter violations RDKit 0
Ghose filter RDKit Passed
Veber filter RDKit Good
Pfizer 3/75 filter RDKit Bad
GSK 4/400 filter RDKit Good
Weighted quantitative estimate of drug-likeness (QEDw) score RDKit 0.804564


Gelsemine
ADME properties
Property nameToolProperty value
Bioavailability score SwissADME 0.55
Solubility class [ESOL] SwissADME Soluble
Solubility class [Silicos-IT] SwissADME Moderately soluble
Blood Brain Barrier permeation SwissADME Yes
Gastrointestinal absorption SwissADME High
Log Kp (Skin permeation, cm/s) SwissADME -7.00
Number of PAINS structural alerts SwissADME 0
Number of Brenk structural alerts SwissADME 1
CYP1A2 inhibitor SwissADME No
CYP2C19 inhibitor SwissADME No
CYP2C9 inhibitor SwissADME No
CYP2D6 inhibitor SwissADME Yes
CYP3A4 inhibitor SwissADME No
P-glycoprotein substrate SwissADME Yes


Gelsemine
Phytochemical - Human target proteins supported by experimental evidence associations
Human target proteins supported by experimental evidence
IMPPAT target identifierGene identifierHGNC symbolEntrez Gene identifierSource
TAR_EXP_000605ENSG00000145888GLRA12741ChEMBL
TAR_EXP_000606ENSG00000101958GLRA22742ChEMBL
TAR_EXP_000607ENSG00000109738GLRB2743ChEMBL
TAR_EXP_001729ENSG00000145451GLRA38001ChEMBL