IMPPAT Phytochemical information: 
Cyproheptadine hydrochloride

Cyproheptadine hydrochloride
Summary

SMILES: CN1CCC(=C2c3ccccc3C=Cc3c2cccc3)CC1.Cl
InChI: InChI=1S/C21H21N.ClH/c1-22-14-12-18(13-15-22)21-19-8-4-2-6-16(19)10-11-17-7-3-5-9-20(17)21;/h2-11H,12-15H2,1H3;1H
InChIKey: ZPMVNZLARAEGHB-UHFFFAOYSA-N
DeepSMILES: CNCCC=Ccccccc6C=Ccc%11cccc6)))))))))))))))CC6.Cl
Scaffold Graph/Node/Bond level: C1=Cc2ccccc2C(=C2CCNCC2)c2ccccc21
Scaffold Graph/Node level: C1CCC2C(C1)CCC1CCCCC1C2C1CCNCC1
Scaffold Graph level: C1CCC(C2C3CCCCC3CCC3CCCCC32)CC1
Functional groups: CN(C)C; cC(=C(C)C)c; cC=Cc; Cl
Chemical classification
ClassyFire Kingdom: Organic compounds
ClassyFire Superclass: Benzenoids
ClassyFire Class: Dibenzocycloheptenes
NP Classifier Biosynthetic pathway: Alkaloids
NP Classifier Superclass: Tyrosine alkaloids
NP Classifier Class: Isoquinoline alkaloids
Synonymous chemical names:
kuline
External chemical identifiers:
CID:CID_13770; ChEMBL:CHEMBL1716; ChEBI:CHEBI:59695; FDASRS:0S9323MCT0; SureChEMBL:SCHEMBL41842; MolPort-003-940-781
Chemical structure download


Cyproheptadine hydrochloride
Physicochemical properties
Property name Tool Property value
Molecular weight (g/mol) RDKit 323.87
Log P RDKit 5.12
Topological polar surface area (Å2) RDKit 3.24
Number of hydrogen bond acceptors RDKit 1
Number of hydrogen bond donors RDKit 0
Number of carbon atoms RDKit 21
Number of heavy atoms RDKit 23
Number of heteroatoms RDKit 2
Number of nitrogen atoms RDKit 1
Number of sulfur atoms RDKit 0
Number of chiral carbon atoms RDKit 0
Stereochemical complexity RDKit 0
Number of sp hybridized carbon atoms RDKit 0
Number of sp2 hybridized carbon atoms RDKit 16
Number of sp3 hybridized carbon atoms RDKit 5
Shape complexity RDKit 0.24
Number of rotatable bonds RDKit 0
Number of aliphatic carbocycles RDKit 1
Number of aliphatic heterocycles RDKit 1
Number of aliphatic rings RDKit 2
Number of aromatic carbocycles RDKit 2
Number of aromatic heterocycles RDKit 0
Number of aromatic rings RDKit 2
Total number of rings RDKit 4
Number of saturated carbocycles RDKit 0
Number of saturated heterocycles RDKit 1
Number of saturated rings RDKit 1
Number of Smallest Set of Smallest Rings (SSSR) RDKit 4


Cyproheptadine hydrochloride
Drug-likeness
Property nameToolProperty value
Number of Lipinski’s rule of 5 violations RDKit 1
Lipinski’s rule of 5 filter RDKit Passed
Number of Ghose filter violations RDKit 0
Ghose filter RDKit Passed
Veber filter RDKit Good
Pfizer 3/75 filter RDKit Bad
GSK 4/400 filter RDKit Bad
Weighted quantitative estimate of drug-likeness (QEDw) score RDKit 0.554763


Cyproheptadine hydrochloride
ADME properties
Property nameToolProperty value
Bioavailability score SwissADME 0.55
Solubility class [ESOL] SwissADME Moderately soluble
Solubility class [Silicos-IT] SwissADME Poorly soluble
Blood Brain Barrier permeation SwissADME No
Gastrointestinal absorption SwissADME Low
Log Kp (Skin permeation, cm/s) SwissADME -4.38
Number of PAINS structural alerts SwissADME 0
Number of Brenk structural alerts SwissADME 1
CYP1A2 inhibitor SwissADME Yes
CYP2C19 inhibitor SwissADME No
CYP2C9 inhibitor SwissADME No
CYP2D6 inhibitor SwissADME Yes
CYP3A4 inhibitor SwissADME No
P-glycoprotein substrate SwissADME Yes


Cyproheptadine hydrochloride
Phytochemical - Human target proteins supported by experimental evidence associations
Human target proteins supported by experimental evidence
IMPPAT target identifierGene identifierHGNC symbolEntrez Gene identifierSource
TAR_EXP_000004ENSG00000094631HDAC610013ChEMBL
TAR_EXP_000798ENSG00000055118KCNH23757ChEMBL