IMPPAT Phytochemical information: 
Indole-3-pyruvic acid

Indole-3-pyruvic acid
Summary

SMILES: OC(=O)C(=O)Cc1c[nH]c2c1cccc2
InChI: InChI=1S/C11H9NO3/c13-10(11(14)15)5-7-6-12-9-4-2-1-3-8(7)9/h1-4,6,12H,5H2,(H,14,15)
InChIKey: RSTKLPZEZYGQPY-UHFFFAOYSA-N
DeepSMILES: OC=O)C=O)Ccc[nH]cc5cccc6
Scaffold Graph/Node/Bond level: c1ccc2[nH]ccc2c1
Scaffold Graph/Node level: C1CCC2NCCC2C1
Scaffold Graph level: C1CCC2CCCC2C1
Functional groups: CC(=O)C(=O)O; c[nH]c
Chemical classification
ClassyFire Kingdom: Organic compounds
ClassyFire Superclass: Organoheterocyclic compounds
ClassyFire Class: Indoles and derivatives
ClassyFire Subclass: Indolyl carboxylic acids and derivatives
NP Classifier Biosynthetic pathway: Alkaloids
NP Classifier Superclass: Tryptophan alkaloids
NP Classifier Class: Simple indole alkaloids
Synonymous chemical names:
indole-3-pyruvic acid
External chemical identifiers:
CID:CID_803; ChEMBL:CHEMBL485012; ChEBI:CHEBI:29750; ZINC:ZINC000001532617; FDASRS:4QM0LT13A8; SureChEMBL:SCHEMBL125249; MolPort-001-763-717
Chemical structure download


Indole-3-pyruvic acid
Physicochemical properties
Property name Tool Property value
Molecular weight (g/mol) RDKit 203.2
Log P RDKit 1.36
Topological polar surface area (Å2) RDKit 70.16
Number of hydrogen bond acceptors RDKit 2
Number of hydrogen bond donors RDKit 2
Number of carbon atoms RDKit 11
Number of heavy atoms RDKit 15
Number of heteroatoms RDKit 4
Number of nitrogen atoms RDKit 1
Number of sulfur atoms RDKit 0
Number of chiral carbon atoms RDKit 0
Stereochemical complexity RDKit 0
Number of sp hybridized carbon atoms RDKit 0
Number of sp2 hybridized carbon atoms RDKit 10
Number of sp3 hybridized carbon atoms RDKit 1
Shape complexity RDKit 0.09
Number of rotatable bonds RDKit 3
Number of aliphatic carbocycles RDKit 0
Number of aliphatic heterocycles RDKit 0
Number of aliphatic rings RDKit 0
Number of aromatic carbocycles RDKit 1
Number of aromatic heterocycles RDKit 1
Number of aromatic rings RDKit 2
Total number of rings RDKit 2
Number of saturated carbocycles RDKit 0
Number of saturated heterocycles RDKit 0
Number of saturated rings RDKit 0
Number of Smallest Set of Smallest Rings (SSSR) RDKit 2


Indole-3-pyruvic acid
Drug-likeness
Property nameToolProperty value
Number of Lipinski’s rule of 5 violations RDKit 0
Lipinski’s rule of 5 filter RDKit Passed
Number of Ghose filter violations RDKit 0
Ghose filter RDKit Passed
Veber filter RDKit Good
Pfizer 3/75 filter RDKit Bad
GSK 4/400 filter RDKit Good
Weighted quantitative estimate of drug-likeness (QEDw) score RDKit 0.739798


Indole-3-pyruvic acid
ADME properties
Property nameToolProperty value
Bioavailability score SwissADME 0.85
Solubility class [ESOL] SwissADME Soluble
Solubility class [Silicos-IT] SwissADME Soluble
Blood Brain Barrier permeation SwissADME Yes
Gastrointestinal absorption SwissADME High
Log Kp (Skin permeation, cm/s) SwissADME -6.62
Number of PAINS structural alerts SwissADME 0
Number of Brenk structural alerts SwissADME 1
CYP1A2 inhibitor SwissADME No
CYP2C19 inhibitor SwissADME No
CYP2C9 inhibitor SwissADME No
CYP2D6 inhibitor SwissADME No
CYP3A4 inhibitor SwissADME No
P-glycoprotein substrate SwissADME No


Indole-3-pyruvic acid
Phytochemical - Human target proteins supported by experimental evidence associations
Human target proteins supported by experimental evidence
IMPPAT target identifierGene identifierHGNC symbolEntrez Gene identifierSource
TAR_EXP_000004ENSG00000094631HDAC610013ChEMBL
TAR_EXP_000119ENSG00000101751POLI11201NPASS
TAR_EXP_000095ENSG00000224143EHMT210919ChEMBL, NPASS
TAR_EXP_000411ENSG00000165092ALDH1A1216NPASS
TAR_EXP_000614ENSG00000087460GNAS2778NPASS
TAR_EXP_000674ENSG00000123636BAZ2B29994NPASS
TAR_EXP_000701ENSG00000164120HPGD3248NPASS
TAR_EXP_000786ENSG00000177606JUN3725NPASS
TAR_EXP_000017ENSG00000169371SNUPN10073NPASS
TAR_EXP_000819ENSG00000235268KDM4E390245NPASS
TAR_EXP_000853ENSG00000276155MAPT4137NPASS
TAR_EXP_000814ENSG00000108424KPNB13837NPASS
TAR_EXP_000966ENSG00000116044NFE2L24780NPASS
TAR_EXP_000880ENSG00000118058KMT2A4297NPASS
TAR_EXP_001923ENSG00000066135KDM4A9682ChEMBL, NPASS
TAR_EXP_001830ENSG00000286112KYAT1883ChEMBL
TAR_EXP_000097ENSG00000108468CBX110951NPASS
TAR_EXP_001125ENSG00000127445PIN15300NPASS
TAR_EXP_001031ENSG00000112312GMNN51053NPASS
TAR_EXP_001344ENSG00000132341RAN5901NPASS
TAR_EXP_001547ENSG00000275349SMN16606NPASS