IMPPAT Phytochemical information: 
Cyclic guanosine monophosphate

Cyclic guanosine monophosphate
Summary

SMILES: O[C@@H]1[C@@H]2OP(=O)(O)OC[C@H]2O[C@H]1n1cnc2c1nc(N)[nH]c2=O
InChI: InChI=1S/C10H12N5O7P/c11-10-13-7-4(8(17)14-10)12-2-15(7)9-5(16)6-3(21-9)1-20-23(18,19)22-6/h2-3,5-6,9,16H,1H2,(H,18,19)(H3,11,13,14,17)/t3-,5-,6-,9-/m1/s1
InChIKey: ZOOGRGPOEVQQDX-UUOKFMHZSA-N
DeepSMILES: O[C@@H][C@@H]OP=O)O)OC[C@H]6O[C@H]9ncncc5ncN)[nH]c6=O
Scaffold Graph/Node/Bond level: O=c1[nH]cnc2c1ncn2C1CC2O[PH](=O)OCC2O1
Scaffold Graph/Node level: OC1NCNC2C1NCN2C1CC2OP(O)OCC2O1
Scaffold Graph level: CC1CCC2CC(C3CCC4C(C)CCCC43)CC2C1
Functional groups: CO; COP(=O)(O)OC; COC; cn(C)c; cnc; cN; c[nH]c; c=O
Chemical classification
ClassyFire Kingdom: Organic compounds
ClassyFire Superclass: Nucleosides, nucleotides, and analogues
ClassyFire Class: Purine nucleotides
ClassyFire Subclass: Cyclic purine nucleotides
NP Classifier Biosynthetic pathway: Carbohydrates
NP Classifier Superclass: Nucleosides
NP Classifier Class: Purine nucleos(t)ides
Synonymous chemical names:
cyclic gmp
External chemical identifiers:
CID:CID_135398570; ChEMBL:CHEMBL395336; ChEBI:CHEBI:16356; ZINC:ZINC000004095501; FDASRS:H2D2X058MU; SureChEMBL:SCHEMBL738; MolPort-027-950-785
Chemical structure download


Cyclic guanosine monophosphate
Physicochemical properties
Property name Tool Property value
Molecular weight (g/mol) RDKit 345.21
Log P RDKit -1.52
Topological polar surface area (Å2) RDKit 174.81
Number of hydrogen bond acceptors RDKit 10
Number of hydrogen bond donors RDKit 4
Number of carbon atoms RDKit 10
Number of heavy atoms RDKit 23
Number of heteroatoms RDKit 13
Number of nitrogen atoms RDKit 5
Number of sulfur atoms RDKit 0
Number of chiral carbon atoms RDKit 4
Stereochemical complexity RDKit 0.4
Number of sp hybridized carbon atoms RDKit 0
Number of sp2 hybridized carbon atoms RDKit 5
Number of sp3 hybridized carbon atoms RDKit 5
Shape complexity RDKit 0.5
Number of rotatable bonds RDKit 1
Number of aliphatic carbocycles RDKit 0
Number of aliphatic heterocycles RDKit 2
Number of aliphatic rings RDKit 2
Number of aromatic carbocycles RDKit 0
Number of aromatic heterocycles RDKit 2
Number of aromatic rings RDKit 2
Total number of rings RDKit 4
Number of saturated carbocycles RDKit 0
Number of saturated heterocycles RDKit 2
Number of saturated rings RDKit 2
Number of Smallest Set of Smallest Rings (SSSR) RDKit 4


Cyclic guanosine monophosphate
Drug-likeness
Property nameToolProperty value
Number of Lipinski’s rule of 5 violations RDKit 0
Lipinski’s rule of 5 filter RDKit Passed
Number of Ghose filter violations RDKit 1
Ghose filter RDKit Failed
Veber filter RDKit Bad
Pfizer 3/75 filter RDKit Good
GSK 4/400 filter RDKit Good
Weighted quantitative estimate of drug-likeness (QEDw) score RDKit 0.443876


Cyclic guanosine monophosphate
ADME properties
Property nameToolProperty value
Bioavailability score SwissADME 0.11
Solubility class [ESOL] SwissADME Very soluble
Solubility class [Silicos-IT] SwissADME Soluble
Blood Brain Barrier permeation SwissADME No
Gastrointestinal absorption SwissADME Low
Log Kp (Skin permeation, cm/s) SwissADME -10.81
Number of PAINS structural alerts SwissADME 0
Number of Brenk structural alerts SwissADME 1
CYP1A2 inhibitor SwissADME No
CYP2C19 inhibitor SwissADME No
CYP2C9 inhibitor SwissADME No
CYP2D6 inhibitor SwissADME No
CYP3A4 inhibitor SwissADME No
P-glycoprotein substrate SwissADME No


Cyclic guanosine monophosphate
Phytochemical - Human target proteins supported by experimental evidence associations
Human target proteins supported by experimental evidence
IMPPAT target identifierGene identifierHGNC symbolEntrez Gene identifierSource
TAR_EXP_001055ENSG00000152270PDE3B5140ChEMBL
TAR_EXP_000039ENSG00000125257ABCC410257ChEMBL
TAR_EXP_000014ENSG00000114770ABCC510057ChEMBL
TAR_EXP_001792ENSG00000121270ABCC1185320ChEMBL
TAR_EXP_001053ENSG00000172572PDE3A5139ChEMBL
TAR_EXP_000089ENSG00000137204SLC22A710864ChEMBL